Refactor filter update to handle empty and NA values in citation data #75
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| # Run CI for R using https://eddelbuettel.github.io/r-ci/ | ||
| name: document-and-deploy | ||
| on: | ||
| push: | ||
| pull_request: | ||
| release: | ||
| env: | ||
| _R_CHECK_FORCE_SUGGESTS_: "false" | ||
| jobs: | ||
| document-and-deploy: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
| - name: Setup | ||
| uses: eddelbuettel/github-actions/r-ci-setup@master | ||
| - name: Bootstrap | ||
| run: ./run.sh bootstrap | ||
| #- name: Dependencies | ||
| # run: ./run.sh install_deps | ||
| - name: All Dependencies | ||
| run: ./run.sh install_all | ||
| - name: Create documentation | ||
| run: | | ||
| R -e " | ||
| install.packages(c('rcmdcheck', 'roxygen2', 'devtools')); | ||
| file.remove('NAMESPACE'); | ||
| descr <- readLines('DESCRIPTION'); | ||
| descr <- stringr::str_replace(descr, '^Date.*$', paste('Date:', Sys.Date())); | ||
| writeLines(descr, 'DESCRIPTION'); | ||
| roxygen2::roxygenise(); | ||
| try(devtools::build_manual()) | ||
| " | ||
| - name: commit | ||
| run: | | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "GitHub Actions" | ||
| git add -f man/\* NAMESPACE | ||
| git commit -m 'Documentation' || echo "No changes to commit" | ||
| git push origin || echo "No changes to commit" | ||
| - name: Deploy latest | ||
| if: github.ref == 'refs/heads/dev' (from dev) | ||
|
Check failure on line 56 in .github/workflows/document-and-deploy.yaml
|
||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| R -e " | ||
| install.packages(c('rsconnect', 'remotes')); | ||
| bspm::disable(); | ||
| remotes::install_github('ESHackathon/CiteSource', force = TRUE); | ||
| rsconnect::setAccountInfo(name=${{secrets.SHINY_LUKAS_ACCOUNT}}, token=${{secrets.SHINY_LUKAS_TOKEN}}, secret=${{secrets.SHINY_LUKAS_SECRET}}); | ||
| rsconnect::deployApp(appName = 'CiteSource_latest', appDir = './inst/shiny-app/CiteSource', forceUpdate = TRUE)" | ||
| - name: Deploy stable version (from main) | ||
| if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master' | ||
| run: | | ||
| R -e " | ||
| rsconnect::deployApp(appName = 'CiteSource', appDir = './inst/shiny-app/CiteSource', forceUpdate = TRUE)" | ||
| - name: Create pkgdown | ||
| run: | | ||
| R -e " | ||
| install.packages('pkgdown'); | ||
| pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)" | ||
| - name: Deploy to GitHub pages 🚀 | ||
| if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master' | ||
| uses: JamesIves/github-pages-deploy-action@v4 | ||
| with: | ||
| clean: true | ||
| branch: gh-pages | ||
| folder: docs | ||
