v1.2
- Upgrade Transcriptclean to v1.0.8 fixing a bug related to non-canonical splice junction correction (mortazavilab/TranscriptClean#14).
- Fix bug related to filtering quantitation output, causing errors in calculation of replicates correlation (this was underestimated), and number of detected gencode genes (this was overestimated).
- Add output organizer output definition into the main pipeline wdl to simplify croo usage.