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Releases: ENCODE-DCC/caper

v0.2.4

07 Jun 10:20
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  • added --use-netrc to use ~/.netrc file to handle HTTP username/password more securely

v0.2.3.4

06 Jun 18:16
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  • Bug fix for --file-db for Caper server when it's defined in cmd line args

v0.2.3.3

06 Jun 16:21
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  • Bug fix for Cromwell server IP address. (None -> localhost by default)
  • Update README

v0.2.3.2

06 Jun 15:12
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  • Default singularity_cachedir at ~/.caper/singularity_cachedir
  • Updated README

v0.2.3

06 Jun 11:13
801cd6f
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  • Caper defaults to use a file DB. You can still use MySQL DB.

v0.2.2

04 Jun 05:43
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  • added subcommand troubleshoot which will show list of errors that occurred during runtime.
  • can have local relative paths in input JSON

v0.2.1.1

01 Jun 02:35
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  • Bug fixes

    • --out-dir didn't work with slurm, sge, pbs backends
    • --singularity-cachedir didn't work correctly if SINGULARITY_CACHEDIR env var is already defined.
  • added --no-build-singularity to prevent building singularity image before running a pipeline.

    • but this can lead to conflicts between tasks trying to build their own local singularity image on the same target location.

v0.2.0

29 May 09:33
8599ca4
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  • bug fix for singularity

    • added --singularity-cachedir to prevent repeatedly building image for every WDL task.
    • automatically calculate SINGULARITY_BINDPATH based on files in input JSON file
      • by finding common roots of those files
  • CaperURI

    • more robust method to catch HTTP_ERROR_CODE from cURL.

v0.1.9

24 May 23:16
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some change in PIP description, nothing else

v0.1.8

24 May 19:42
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  • Use md5sum in hashlib instead of randomized hash() for directory suffix when downloading URLs.