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update README
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leepc12 committed Jun 6, 2019
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Expand Up @@ -301,8 +301,10 @@ Run Caper. Make sure to keep your SSH session alive.
$ qlogin -l h_rt=144:00:00 -l h_vmem=2G
```

`--deepcopy` is optional for input JSON file with remote URIs defined in it. Those URIs (`http(s)://`, `s3://`, `gs://`, ...) will be recursively copied into a target storage for a corresponding chosen backend. For example, GCS bucket (`gs://`) for GCP backend (`gcp`).

```bash
$ caper run [WDL] -i [INPUT_JSON]
$ caper run [WDL] -i [INPUT_JSON] --deepcopy
```

Or run a Cromwell server with Caper. Make sure to keep server's SSH session alive.
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