Code

FINAL eamxx downstream merge!#6761

Code

Merged

rljacob merged 180 commits intomasterE3SM-Project/E3SM:masterfrom jgfouca/final_scream_downstream_2024_11_21E3SM-Project/E3SM:jgfouca/final_scream_downstream_2024_11_21Copy head branch name to clipboardNov 22, 2024

+3,965-3,600

Commits

Commits on Oct 7, 2024

• Initial step. Get it building with latest rrtmgp subm

  jgfouca

  committed
  664c784

Commits on Oct 23, 2024

• Fixes for sw

  jgfouca

  committed
  4e2dd44

• rrtmgp_lw no allocations

  jgfouca

  committed
  a9c40fd

• Final pool allocs

  jgfouca

  committed
  1a701dd

• Fix unit test

  jgfouca

  committed
  7842238

• Merge remote-tracking branch 'origin/master' into jgfouca/rrtmgp_interface_back_to_kokkos

  Show description for ea0a364
  jgfouca

  committed
  ea0a364

• Something went wrong with merge

  jgfouca

  committed
  afbefb4

Commits on Oct 24, 2024

• Fix some pool issues

  jgfouca

  committed
  461066e

• alloc and init everything

  jgfouca

  committed
  8ee29b5

Commits on Oct 25, 2024

• Way more pool mem was being allocated than was needed

  jgfouca

  committed
  360692f

• Moved base_ref in the wrong direction

  jgfouca

  committed
  1634f02

Commits on Oct 31, 2024

• Refactor cmake

  jgfouca

  committed
  0e5ef84

• progress

  jgfouca

  committed
  48ea3a9

• Transition to object complete

  jgfouca

  committed
  7f9aaac

• rain_sed working

  jgfouca

  committed
  4d404f9

Commits on Nov 1, 2024

• Upwind working

  jgfouca

  committed
  f669e8b

• p3_unit_tests and macro cleanup

  jgfouca

  committed
  cda50ba

• p3_cloud_water_autoconversion_test

  jgfouca

  committed
  c3560ef

• p3_back_to_cell_average was not following the standard pattern

  jgfouca

  committed
  cd28419

• p3_back_to_cell_average

  jgfouca

  committed
  a287040

• Two more easy ones

  jgfouca

  committed
  eae74a8

• Four more

  jgfouca

  committed
  ac5851d

• get_latent_heat is not being used on the cxx side

  jgfouca

  committed
  3a64d91

• More

  jgfouca

  committed
  dd7f453

• More

  jgfouca

  committed
  343c6d6

Commits on Nov 4, 2024

• Rename the LEV scream tag from 'Lev' to 'altitude' in the source grid when using a remap file.

  odiazib

  committed
  8590674

• Removing unnecessary if statement.

  odiazib

  committed
  f1c9a39

• All bfb unit tests complete

  jgfouca

  committed
  e166eaa

• Fix bug by using target grid instead of source grid.

  odiazib

  committed
  23fd730

• Add ilev as a default output in all EAMxx output streams

  Show description for f72cc87
  AaronDonahue

  committed
  f72cc87

• p3_run_and_cmp fixed up

  jgfouca

  committed
  a2b0af0

• Progress. Can not remove fortran

  jgfouca

  committed
  5e46e33

• Remove most of the f90 bridges

  jgfouca

  committed
  58b70ac

• Rename FortranData

  jgfouca

  committed
  576d7b4

• fix typo in new changes

  AaronDonahue

  committed
  96f5a28

Commits on Nov 5, 2024

• reorg

  jgfouca

  committed
  312ee63

• More reorg

  jgfouca

  committed
  3c2c875

• Fix typo

  jgfouca

  committed
  6caafa3

Commits on Nov 7, 2024

• ci(Mergify): configuration update

  Show description for 8f96dfe
  bartgol

  committed
  8f96dfe

• Mergify: fix syntax

  bartgol

  committed
  6f30ec5

• Remove overload of create_tracer_data_reader. Pass tracer file type to change tag Lev of vertical emissions.

  odiazib

  committed
  e0a1f20

• Workflows: nano-fixes to eamxx workflows

  Show description for deb0ceb
  bartgol

  committed
  deb0ceb

• Merge pull request #3099 from E3SM-Project/mergify/bartgol/config-update

  Show description for 5b14f5b
  bartgol

  authored
  5b14f5b

• Update .mergify.yml

  Show description for 776a79a
  bartgol

  authored
  776a79a

• pre sed

  jgfouca

  committed
  2b6fd04

• seds

  jgfouca

  committed
  68edf0c

• seds

  jgfouca

  committed
  037d5af

• Fix bug

  jgfouca

  committed
  abf91a6

• Minor fixes

  jgfouca

  committed
  23dbd2e

Commits on Nov 8, 2024

• Another minor fix

  jgfouca

  committed
  03630d3

• Merge pull request #3102 from E3SM-Project/bartgol/workflows/fix-eamxx-workflows

  bartgol

  authored
  59a42d3

• EAMxx: fix query-scream util script

  Show description for a178078
  bartgol

  committed
  a178078

• Merge pull request #3103 from E3SM-Project/bartgol/eamxx/query-scream-fix

  bartgol

  authored
  a37c4e8

• Update .mergify.yml

  Show description for 579850c
  bartgol

  committed
  579850c

• Update ekat submodule

  bartgol

  committed
  fefea96

• EAMxx: adapt to changes in ekat's catch main logic

  bartgol

  committed
  acd26a1

Commits on Nov 9, 2024

• EAMxx: Adds a SMS ne30 test that uses ne4 emission file

  singhbalwinder

  committed
  fa86f7a

• EAMxx:Modified folder name nad uses alias for atmchange

  singhbalwinder

  committed
  9f6e83e

Commits on Nov 10, 2024

• EAMxx:Adds an alias and upload the mapping file ne4->ne30

  singhbalwinder

  committed
  c07bc72

• EAMxx: Adds remap test to nightlies

  singhbalwinder

  committed
  e3f6717

• EAMxx: Removes init file from mam4xx test as it is now picked automatically

  singhbalwinder

  committed
  2508f47

• EAMxx: Fix a comment in the shell script

  singhbalwinder

  authored
  806a6f1

• EAMxx: Fixes a comment in the microphysics testmod file

  singhbalwinder

  authored
  9788c57

• EAMxx: Fixes a comment in the newly added test

  singhbalwinder

  authored
  97b2dd7

Commits on Nov 11, 2024

• Workflows: fix logic to execute/skip eamxx testing workflows

  bartgol

  committed
  e95224e

• EMAxx - Update comment in enum TracerFileType to avoid confusion.

  odiazib

  committed
  37ae73a

• Merge pull request #3104 from E3SM-Project/bartgol/ekat-update-20241108

  Show description for 81507d1
  jgfouca

  authored
  81507d1

• Merge remote-tracking branch 'origin/master' into jgfouca/bfb_unit_no_f90

  Show description for bf6aeb7
  jgfouca

  committed
  bf6aeb7

• Update based on better ekat flag handling

  jgfouca

  committed
  e779856

• Expose EAMxx to the git-version hash saved in the component cpl.

  Show description for 1062373
  AaronDonahue

  committed
  1062373

• EAMxx - Rename enum VERT_EMISSION to ELEVATED_EMISSIONS.

  odiazib

  committed
  342958c

• EAMxx - Rename variables: 'elevated_' prefix replaces 'vert_'.

  odiazib

  committed
  3eb6d04

• EAMxx - Rename tag names: 'elevated' replaces 'verti'

  odiazib

  committed
  a596e6b

• EAMxx - Replace 'verti' with 'elevated' in tag names; add missing lines.

  odiazib

  committed
  589742d

• Merge remote-tracking branch 'origin/master' into aarondonahue/io/add_ilev_to_output

  AaronDonahue

  committed
  3ac38e0

• This commit fixes a bug in defining an int layout for hyai and hybi

  AaronDonahue

  committed
  c43116b

Commits on Nov 12, 2024

• Merge pull request #3095 from eagles-project/oscar/ne120-mam-microphysics

  Show description for 4afd0af
  bartgol

  authored
  4afd0af

• Update .mergify.yml

  Show description for a1705dd
  bartgol

  committed
  a1705dd

• Mergify: enable pull request automerge

  bartgol

  committed
  0939ad3

• Merge pull request #3091 from E3SM-Project/aarondonahue/io/add_ilev_to_output

  Show description for aca29bc
  AaronDonahue

  authored
  aca29bc

• Merge pull request #3096 from E3SM-Project/jgfouca/bfb_unit_no_f90

  Show description for 12ed756
  jgfouca

  authored
  12ed756

• Mergify: set commit message for automerge

  bartgol

  committed
  035d8c2

• Mergify: remove redundant merge protection condition in automerge rule

  Show description for b4e18d2
  bartgol

  committed
  b4e18d2

• Merge pull request #3106 from E3SM-Project/bartgol/workflows/fix-eamxx-nightlies-conditions

  bartgol

  authored
  230167c

Commits on Nov 13, 2024

• Quick fix for baseline generation

  Show description for 2bb921e
  jgfouca

  committed
  2bb921e

• Merge pull request #3107 from E3SM-Project/jgfouca/quick_fix_baseline_gen

  Show description for efde774
  jgfouca

  authored
  efde774

• Fixup small kernel situation

  jgfouca

  committed
  5dc66fc

• Mergify: fix merge proteciton rule

  Show description for 6318f41
  bartgol

  committed
  6318f41

• make latitude absolute value in the relative checking to make it compatible for southern hemisphere cases

  

  Peter Andrew Bogenschutz

  committed
  dfbfcfd

• Mergify: fix merge proteciton rule

  Show description for db5b35d
  bartgol

  committed
  db5b35d

• Merge branch 'master' into bogensch/dpxx_latfix

  bogensch

  authored
  fd23d1f

• add option to prescribe an invariant solar constant

  

  Peter Andrew Bogenschutz

  committed
  b7211bd

Commits on Nov 14, 2024

• move placement of line where fixed solar irradiance is defined

  

  Peter Andrew Bogenschutz

  committed
  50815e2

• Merge pull request #3110 from E3SM-Project/jgfouca/fix_small_kernels

  Show description for 224e637
  bartgol

  authored
  224e637

• EAMxx: Interface for reading file and setting index_season_lai

  odiazib

  committed
  8e72936

• Use host version for find_season_index and add function description

  odiazib

  committed
  79cb356

• EAMxx: Obtain season_wes_file from input file and use MAM4xx main branch

  odiazib

  committed
  a97a773

• EAMxx: apply clang format to find_season_index_utils.hpp.

  odiazib

  committed
  1f9563a

• EAMxx: Obtain season_wes.nc file.

  odiazib

  committed
  0d1fdc3

• EAMxx: remove unused code.

  odiazib

  committed
  9fbdbb3

• Fixes for p3 tests CMake settings

  Show description for a9850ad
  jgfouca

  committed
  a9850ad

• Fix threads arg

  jgfouca

  committed
  d86865e

• Merge pull request #3114 from E3SM-Project/jgfouca/p3_cmake_fixes

  Show description for 90ef094
  jgfouca

  authored
  90ef094

• Merge remote-tracking branch 'origin/master' into jgfouca/rrtmgp_interface_back_to_kokkos

  Show description for 3c07f42
  jgfouca

  committed
  3c07f42

• Turn YAKL back on by default for now

  jgfouca

  committed
  6ce5b69

• Merge remote-tracking branch 'upstream/master' into jgfouca/upstream_merge_2024_11_14

  Show description for d93e637
  jgfouca

  committed
  d93e637

• Remove some debugging stuff

  jgfouca

  committed
  f837023

• typo in links in eamxx docs

  mahf708

  authored
  03ab712

Commits on Nov 15, 2024

• Merge pull request #3115 from jgfouca/upstream_merge_2024_11_14

  Show description for 746c90c
  mergify[bot]

  authored
  746c90c

• EAMxx: change ghci-snl-cuda specs

  Show description for 2354936
  bartgol

  committed
  2354936

• Workflows: get Cuda arch from nvidia-smi in eamxx-sa-XYZ.yml

  bartgol

  committed
  93a99aa

• Workflows: fetch changed files in chunks

  Show description for 4625182
  bartgol

  committed
  4625182

• Workflows: fix job name

  bartgol

  committed
  0f2c4ba

• Merge pull request #3116 from E3SM-Project/bartgol/eamxx/ghci-snl-cuda-changes

  Show description for b6b9007
  bartgol

  authored
  b6b9007

• Merge pull request #3030 from E3SM-Project/jgfouca/rrtmgp_interface_back_to_kokkos

  Show description for bc5e39b
  jgfouca

  authored
  bc5e39b

• Workflows: fix detection of CUDA arch in eamxx-sa workflows

  bartgol

  committed
  49d89f9

• Workflows: allow to force cdash submission via workflow_dispatch for eamxx

  bartgol

  committed
  b2e02ea

• Merge pull request #3094 from E3SM-Project/aarondonahue/IO/add_githash_to_eamxx_output_meta

  Show description for 3f99ea0
  AaronDonahue

  authored
  3f99ea0

• Merge pull request #3108 from eagles-project/oscar/find_season_index

  Show description for 37dea04
  jgfouca

  authored
  37dea04

• emissions interface--running and calling mam4xx. next diagnose error

  

  mjs271

  authored and

  singhbalwinder

  committed
  9673d6b

• cleanup to fix warnings and change path to emissions input files

  

  mjs271

  authored and

  singhbalwinder

  committed
  c3f2ebf

• got online emis. interface working

  

  mjs271

  authored and

  singhbalwinder

  committed
  749f207

• online emissions interface appears to be working

  

  mjs271

  authored and

  singhbalwinder

  committed
  484d2c1

• bump mam4xx submodule, add comments to srf_online_emis_interface

  

  mjs271

  authored and

  singhbalwinder

  committed
  829c560

• update mam4xx to main

  

  mjs271

  authored and

  singhbalwinder

  committed
  b2dbb85

• comment out error-inducing code in mam4_amicphys.cpp and small reorg change in online_emission.hpp

  

  mjs271

  authored and

  singhbalwinder

  committed
  24d3e11

• Adds sst variable from the ocean model in EAMxx via coupler

  singhbalwinder

  committed
  405ce81

• Adds dstfluxes (4 values per col) from coupler to eamxx

  singhbalwinder

  committed
  e38b45b

• Adds all input variables for online emissions into the interface cpp

  singhbalwinder

  committed
  13f6cfc

• Commits changes in submodule MAM4xx

  singhbalwinder

  committed
  52afd72

• EAMxx:Adds soil erodibility file read and sent to online emission read

  singhbalwinder

  committed
  16a1217

• Changes needed to start validatioon with EAM

  singhbalwinder

  committed
  52f32c0

• EAMxx: dust emissions matches EAMvs grdi cell

  singhbalwinder

  committed
  dd258df

• EAMxx:calculate_seasalt_numflux_in_bins validated

  singhbalwinder

  committed
  9e0ad96

• EAMxx: marine_organic_emis validated with hardwired file read mom

  singhbalwinder

  committed
  a7d47e9

• EAMxx: Partial implementation of marine orgaics file read

  singhbalwinder

  committed
  0594667

• EAMxx:Reading and interpolation of mariane organic file works, not tested yet

  singhbalwinder

  committed
  2f0d6c8

• EAMxx: Connects marine organics emiss with MAM4xx codes

  singhbalwinder

  committed
  82e843b

• EAMxx:Fixes units for marine organic emissions

  singhbalwinder

  committed
  5d8341f

• EAMxx: Adds logic to zero out constituent fluxes, cleanup

  singhbalwinder

  committed
  c681f07

• EAMxx: Reverts input yaml and CMake, changes cons fluxes to updated

  singhbalwinder

  committed
  a150d9d

• EAMxx: Some fixes after rebase

  singhbalwinder

  committed
  f0a33da

• EAMxx:Adds loop to update file read for marine organics, cleanup

  singhbalwinder

  committed
  80a57f0

• fixup! EAMxx: Some fixes after rebase

  Show description for 15f44fd
  

  mjs271

  authored and

  singhbalwinder

  committed
  15f44fd

• EAMxx:Fixes file path and specify vector components for dust flux

  singhbalwinder

  committed
  bdd475f

• EAMxx: MAM4xx submodule pointing to main that include GPU fixes

  singhbalwinder

  committed
  4e120c7

• EAMxx: Some codes re-arranged after rebase

  singhbalwinder

  committed
  7b8f7fd

• EAMxx:Removes accidently added file

  singhbalwinder

  committed
  4195b41

• update mam4xx submodule to fix gpu compilation error

  

  mjs271

  authored and

  singhbalwinder

  committed
  e715b8b

• EAMxx: Fixes a gpu bug requiring a particular format for dstflx

  singhbalwinder

  committed
  cc63e5d

• EAMxx: Clang format

  singhbalwinder

  committed
  40a6190

• EAMxx: Fixed some comments paths and other minor cleanup

  singhbalwinder

  committed
  f3a29b1

• EAMxx: Moves online emiss and constituent init to a new function hpp file

  singhbalwinder

  committed
  8d4ca76

• fix cuda compile warnings

  

  mjs271

  authored and

  singhbalwinder

  committed
  a20712c

• EAMxx:Inits constituent fluxes to zero

  singhbalwinder

  committed
  a40341e

• Revert "EAMxx: Clang format"

  Show description for df4f13c
  

  mjs271

  authored and

  singhbalwinder

  committed
  df4f13c

• ff mam4xx to current main

  

  mjs271

  authored and

  singhbalwinder

  committed
  60a90e9

• EAMxx: Remove all diffs from microphysics cpp file

  singhbalwinder

  committed
  c8c4d65

Commits on Nov 16, 2024

• Merge pull request #3117 from E3SM-Project/bartgol/workflows/fix-pre-process-pr

  Show description for ed62e69
  bartgol

  authored
  ed62e69

• EAMxx: Adds missing namelist entries for multi process test

  singhbalwinder

  committed
  e02b76c

• EAMxx: Moves fences into the interface and remove extra comments

  singhbalwinder

  committed
  71e4bc5

Commits on Nov 18, 2024

• Bump DavidAnson/markdownlint-cli2-action from 17 to 18

  Show description for b9333f5
  dependabot[bot]

  authored
  b9333f5

• Merge pull request #3118 from dependabot/github_actions/DavidAnson/markdownlint-cli2-action-18

  Show description for e98c12b
  mergify[bot]

  authored
  e98c12b

Commits on Nov 19, 2024

• Merge pull request #3083 from E3SM-Project/mjs/eamxx/aero_emis_interface

  bartgol

  authored
  0af3b66

• EAMxx: Modify microphysics interface to include sethet (washout rates) computations.

  odiazib

  committed
  d0f2a50

• EAMxx: Update mam4xx submodule to fix CUDA test.

  odiazib

  committed
  00d55a0

• Add standard name metadata to most EAMxx output variables

  Show description for 2b50dbb
  AaronDonahue

  committed
  2b50dbb

• fix standard names for low/med/hgh cloud area fraction types

  AaronDonahue

  committed
  d44a616

• Merge remote-tracking branch 'origin' into bogensch/dpxx_latfix

  

  Peter Bogenschutz

  committed
  0bc4a10

• Merge remote-tracking branch 'origin' into bogensch/add_fixed_solar_constant

  

  Peter Bogenschutz

  committed
  86abc7a

Commits on Nov 20, 2024

• EAMxx: Add aerosols and gases outputs to ensure the microscopy baseline test is sensitive to changes in the interface.

  odiazib

  committed
  af3343b

• Merge pull request #3120 from eagles-project/oscar/sethet_interface

  Show description for f7a7ad6
  jgfouca

  authored
  f7a7ad6

• Merge pull request #3112 from bogensch/add_fixed_solar_constant

  Show description for 69a3d39
  mergify[bot]

  authored
  69a3d39

• Merge pull request #3111 from bogensch/dpxx_latfix

  Show description for 35c97e8
  mergify[bot]

  authored
  35c97e8

• Merge pull request #3105 from aarondonahue/io/add_standard_name_metadata

  Show description for c98f074
  mergify[bot]

  authored
  c98f074

• Mergify: dismiss reviews when new commits are pushed

  bartgol

  committed
  1df5b17

• Merge pull request #3122 from E3SM-Project/bartgol/fix-mergify

  Show description for 767c2a0
  bartgol

  authored
  767c2a0

Commits on Nov 21, 2024

• Merge remote-tracking branch 'scream/master' into jgfouca/final_scream_downstream_2024_11_21

  Show description for 28474c3
  jgfouca

  committed
  28474c3

Commits on Nov 22, 2024

• Workflows: simplified and fixed eamxx workflow files

  Show description for 0d3b7da
  bartgol

  committed
  0d3b7da

• update pam to conform to new eamxx p3

  mahf708

  committed
  febfb90