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Add compsets and support files for v3 single forcing simulations #6563

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merged 14 commits into from
Sep 11, 2024
Merged

Add compsets and support files for v3 single forcing simulations #6563

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104dd94
Add compsets and support files for v3 single forcing simulations
wlin7 Aug 26, 2024
485ca58
Correct linoz_data_type for hist-nat
wlin7 Aug 27, 2024
383f137
Add compset hist-all-xaer
wlin7 Aug 28, 2024
9bb98d7
Add ext_frc_volc_type to use_cases having only volcanic SO2 varying o…
wlin7 Aug 29, 2024
47e474c
Remove alternative aliases for v3 single-forcings compsets
wlin7 Sep 3, 2024
73a9641
Add to list of the supported coupled compsets
wlin7 Sep 3, 2024
9c88f0d
Update docs for the new compsets
wlin7 Sep 3, 2024
5c8c736
Fix markdown text in user's guide
wlin7 Sep 4, 2024
0493300
Add single forcing table
rljacob Sep 4, 2024
344baca
Fix linting of markdown
rljacob Sep 4, 2024
8e6f5ec
remove CMIP6 from MMF compsets
whannah1 Sep 5, 2024
835ca84
simplify CMIP6 physics default config for EAM
whannah1 Sep 6, 2024
8208d4b
specify ELM use case for MMF transient compset
whannah1 Sep 6, 2024
a0e3ffd
Explicitly set dust_emis_scheme=2 for MMF
wlin7 Sep 9, 2024
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48 changes: 45 additions & 3 deletions cime_config/allactive/config_compsets.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -86,23 +86,65 @@
<lname>20TRSOI_EAM%CMIP6_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<!-- Compsets for historical single forcing experiments, two aliases each with WCYCL20TR or hist as prefix -->

<compset>
<alias>WCYCL20TR-GHG</alias>
<lname>20TRSOI_EAM%CMIP6-GHG_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-aer</alias>
<lname>20TRSOI_EAM%CMIP6-AER_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-xGHG-xaer</alias>
<lname>20TRSOI_EAM%CMIP6-xGHG-xAER_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-nat</alias>
<lname>20TRSOI_EAM%CMIP6-NAT_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-ozone</alias>
<lname>20TRSOI_EAM%CMIP6-OZONE_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-lulc</alias>
<lname>20TRSOI_EAM%CMIP6-LULC_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-volc</alias>
<lname>20TRSOI_EAM%CMIP6-VOLC_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-xaer</alias>
<lname>20TRSOI_EAM%CMIP6-xAER_ELM%CNPRDCTCBCTOP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<!-- ************************************************ -->
<!-- MMF coupled compsets -->
<!-- ************************************************ -->
<compset>
<alias>WCYCL1950-MMF1</alias>
<lname>1950SOI_EAM%CMIP6-MMF1_ELM%SPBC_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
<lname>1950SOI_EAM%MMF1_ELM%SPBC_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<compset>
<alias>WCYCL20TR-MMF1</alias>
<lname>20TRSOI_EAM%CMIP6-MMF1_ELM%SP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
<lname>20TRSOI_EAM%MMF1_ELM%SP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>

<!-- separate compset for testing (NS = no spinup) -->
<compset>
<alias>WCYCL20TRNS-MMF1</alias>
<lname>20TR_EAM%CMIP6-MMF1_ELM%SP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
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@wlin7 wlin7 Sep 5, 2024 •
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@whannah1 ,Thanks for simplifying the MMF1 compset without explicit reference to CMIP6.
With this, there is no need to distinguish the config option in config_component.xml between CMIP6-MMF1 and CMIP6-others. But for reference, had CMIP6-MMF1 been kept, this negative look around would be able to exclude CMIP6-MMF1 from CMIP6-.+ (such as CMIP6-GHG) for the pattern matching: _EAM%CMIP6-((?!MMF1).)*_ELM .

<lname>20TR_EAM%MMF1_ELM%SP_MPASSI_MPASO_MOSART_SGLC_SWAV</lname>
</compset>
<!-- ************************************************** -->
<!-- ************************************************** -->
Expand Down
121 changes: 121 additions & 0 deletions components/eam/bld/namelist_files/use_cases/20TR_eam_CMIP6-GHG_chemUCI-Linoz-mam5-vbs.xml
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@@ -0,0 +1,121 @@
<?xml version="1.0"?>
<namelist_defaults>

<!-- Set default output options for CMIP6 simulations -->
<cosp_lite>.true.</cosp_lite>

<!-- For comprehensive history -->
<history_amwg>.true.</history_amwg>
<history_aerosol>.true.</history_aerosol>
<history_aero_optics>.true.</history_aero_optics>

<!-- Solar constant from CMIP6 input4MIPS -->
<solar_data_file>atm/cam/solar/Solar_1850control_input4MIPS_c20181106.nc</solar_data_file>
<solar_data_ymd>18500101</solar_data_ymd>
<solar_data_type>FIXED</solar_data_type>

<!-- GHG values from CMIP6 input4MIPS -->
<bndtvghg>atm/cam/ggas/GHG_CMIP-1-2-0_Annual_Global_0000-2014_c20180105.nc</bndtvghg>
<scenario_ghg>RAMPED</scenario_ghg>

<!-- External forcing for BAM or MAM. CMIP6 input4mips data -->
<ext_frc_type >CYCLICAL</ext_frc_type>
<ext_frc_cycle_yr >1850</ext_frc_cycle_yr>
<no2_ext_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_NO2_aircraft_vertical_1750-2015_1.9x2.5_c20170608.nc </no2_ext_file>
<!-- Use 1850-2014 averaged volcanic SO2 emission for 1850 -->
<so2_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_1850_2014_avg_so2_elev_strat_1850.nc </so2_ext_file>
<soag0_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/emissions-cmip6_e3sm_SOAG0_elev_1850-2014_1.9x2.5_c20230201.nc </soag0_ext_file>
<bc_a4_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_elev_1850-2014_c180205.nc </bc_a4_ext_file>
<mam7_num_a1_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a1_elev_1850-2014_c180205.nc </mam7_num_a1_ext_file>
<num_a2_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a2_elev_1850-2014_c180205.nc </num_a2_ext_file>
<mam7_num_a3_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a4_elev_1850-2014_c180205.nc </mam7_num_a3_ext_file> <!-- This is to set num_a4 emissions -->
<pom_a4_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_pom_a4_elev_1850-2014_c180205.nc </pom_a4_ext_file>
<so4_a1_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a1_elev_1850-2014_c180205.nc </so4_a1_ext_file>
<so4_a2_ext_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a2_elev_1850-2014_c180205.nc </so4_a2_ext_file>

<!-- Surface emissions for chemUCI-Linoz, MAM5, VBS SOA. CMIP6 input4mips data -->
<srf_emis_type >CYCLICAL</srf_emis_type>
<srf_emis_cycle_yr >1850</srf_emis_cycle_yr>
<c2h4_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H4_surface_1850-2014_1.9x2.5_c20210323.nc </c2h4_emis_file>
<c2h6_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C2H6_surface_1850-2014_1.9x2.5_c20210323.nc </c2h6_emis_file>
<c3h8_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_C3H8_surface_1850-2014_1.9x2.5_c20210323.nc </c3h8_emis_file>
<ch2o_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH2O_surface_1850-2014_1.9x2.5_c20210323.nc </ch2o_emis_file>
<ch3cho_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3CHO_surface_1850-2014_1.9x2.5_c20210323.nc </ch3cho_emis_file>
<ch3coch3_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CH3COCH3_surface_1850-2014_1.9x2.5_c20210323.nc </ch3coch3_emis_file>
<co_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_CO_surface_1850-2014_1.9x2.5_c20210323.nc </co_emis_file>
<isop_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_ISOP_surface_1850-2014_1.9x2.5_c20210323.nc </isop_emis_file>
<isop_vbs_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_ISOP_surface_1850-2014_1.9x2.5_c20210323.nc </isop_vbs_emis_file>
<c10h16_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_MTERP_surface_1850-2014_1.9x2.5_c20230126.nc </c10h16_emis_file>
<nox_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions-cmip6_e3sm_NO_surface_1850-2014_1.9x2.5_c20220425.nc </nox_emis_file>
<dms_emis_file >atm/cam/chem/trop_mozart_aero/emis/DMSflux.1850.1deg_latlon_conserv.POPmonthlyClimFromACES4BGC_c20160416.nc </dms_emis_file>
<soag0_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/emissions-cmip6_e3sm_SOAG0_surf_1850-2014_1.9x2.5_c20230201.nc </soag0_emis_file>
<so2_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so2_surf_1850-2014_c180205.nc </so2_emis_file>
<bc_a4_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_surf_1850-2014_c180205.nc </bc_a4_emis_file>
<mam7_num_a1_emis_file>atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a1_surf_1850-2014_c180205.nc </mam7_num_a1_emis_file>
<num_a2_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a2_surf_1850-2014_c180205.nc </num_a2_emis_file>
<mam7_num_a3_emis_file>atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a4_surf_1850-2014_c180205.nc </mam7_num_a3_emis_file> <!-- This is to set num_a4 emissions -->
<pom_a4_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_pom_a4_surf_1850-2014_c180205.nc </pom_a4_emis_file>
<so4_a1_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a1_surf_1850-2014_c180205.nc </so4_a1_emis_file>
<so4_a2_emis_file >atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a2_surf_1850-2014_c180205.nc </so4_a2_emis_file>
<e90_emis_file >atm/cam/chem/trop_mozart_aero/emis/chem_gases/2degrees/emissions_E90_surface_1750-2015_1.9x2.5_c20210408.nc </e90_emis_file>

<airpl_emis_file></airpl_emis_file> <!-- need to be empty, but if specifying empty here, the value would be root of input_data_path -->

<!-- Prescribed oxidants for aerosol chemistry. Ozone is from CMIP6 input4MIPS file -->
<tracer_cnst_type >CYCLICAL</tracer_cnst_type>
<tracer_cnst_cycle_yr>1849</tracer_cnst_cycle_yr>
<tracer_cnst_file >oxid_1.9x2.5_L26_1850-2015_c20181106.nc</tracer_cnst_file>
<tracer_cnst_filelist>''</tracer_cnst_filelist>
<tracer_cnst_datapath>atm/cam/chem/trop_mozart_aero/oxid</tracer_cnst_datapath>
<tracer_cnst_specifier>'prsd_O3:O3','prsd_NO3:NO3','prsd_OH:OH'</tracer_cnst_specifier>

<!-- prescribed methane -->
<prescribed_ghg_file >ch4_oxid_1.9x2.5_L26_1990-1999clim.c090804.nc</prescribed_ghg_file>
<prescribed_ghg_datapath >atm/cam/chem/methane</prescribed_ghg_datapath>
<prescribed_ghg_type >CYCLICAL</prescribed_ghg_type>
<prescribed_ghg_cycle_yr >1995</prescribed_ghg_cycle_yr>
<prescribed_ghg_filelist >''</prescribed_ghg_filelist>
<prescribed_ghg_specifier>'prsd_ch4:CH4'</prescribed_ghg_specifier>

<!-- rad_climate -->
<rad_climate>
'A:H2OLNZ:H2O', 'N:O2:O2', 'N:CO2:CO2',
'A:O3:O3', 'A:N2OLNZ:N2O', 'A:CH4LNZ:CH4',
'N:CFC11:CFC11', 'N:CFC12:CFC12',
'M:mam5_mode1:$INPUTDATA_ROOT/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc',
'M:mam5_mode2:$INPUTDATA_ROOT/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc',
'M:mam5_mode3:$INPUTDATA_ROOT/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc',
'M:mam5_mode4:$INPUTDATA_ROOT/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc',
'M:mam5_mode5:$INPUTDATA_ROOT/atm/cam/physprops/mam5_mode5_rrtmg_sig1.2_dgnl.40_c03072023.nc'
</rad_climate>

<!-- Marine organic aerosol namelist settings -->
<mam_mom_mixing_state>3</mam_mom_mixing_state>
<mam_mom_cycle_yr >1 </mam_mom_cycle_yr >
<mam_mom_datapath >'atm/cam/chem/trop_mam/marine_BGC/' </mam_mom_datapath >
<mam_mom_datatype >'CYCLICAL' </mam_mom_datatype >
<mam_mom_filename >'monthly_macromolecules_0.1deg_bilinear_latlon_year01_merge_date.nc' </mam_mom_filename > <!-- Using the 2000 file, for now -->
<mam_mom_fixed_tod >0 </mam_mom_fixed_tod >
<mam_mom_fixed_ymd >0 </mam_mom_fixed_ymd >
<mam_mom_specifier >'chla:CHL1','mpoly:TRUEPOLYC','mprot:TRUEPROTC','mlip:TRUELIPC' </mam_mom_specifier >

<!-- Stratospheric ozone (Linoz) updated using CMIP6 input4MIPS GHG concentrations -->
<chlorine_loading_file >atm/cam/chem/trop_mozart/ub/Linoz_Chlorine_Loading_CMIP6_0003-2017_c20171114.nc</chlorine_loading_file>
<chlorine_loading_fixed_ymd >18500101</chlorine_loading_fixed_ymd>
<chlorine_loading_type >FIXED</chlorine_loading_type>
<linoz_data_cycle_yr >1850</linoz_data_cycle_yr>
<linoz_data_file >linv3_1849-2017_CMIP6_Hist_10deg_58km_c20230705.nc</linoz_data_file>
<linoz_data_path >atm/cam/chem/trop_mozart/ub</linoz_data_path>
<linoz_data_type >CYCLICAL</linoz_data_type>

<!-- Set surface area density (SAD) variables -->
<sad_type>SERIAL</sad_type>

<!-- Turn off ozone dry deposition, as Linoz O3v2 and ozone are not separated for now. Need to turn on ozone dry deposition when interactive tropospheric chemistry is implemented -->
<drydep_method >'xactive_lnd'</drydep_method>
<drydep_list >'O3','H2O2','CH2O','CH3OOH','NO','NO2','HNO3','HO2NO2','PAN','CO','CH3COCH3','C2H5OOH','CH3CHO','H2SO4','SO2','NO3','N2O5','SOAG0','SOAG15','SOAG24','SOAG35','SOAG34','SOAG33','SOAG32','SOAG31'</drydep_list>
<gas_wetdep_method >'NEU'</gas_wetdep_method>
<gas_wetdep_list >'C2H5OOH','CH2O','CH3CHO','CH3OOH','H2O2','H2SO4','HNO3','HO2NO2','SO2','SOAG0','SOAG15','SOAG24','SOAG35','SOAG34','SOAG33','SOAG32','SOAG31'</gas_wetdep_list>
<fstrat_efold_list>'CH2O', 'CH3O2', 'CH3OOH', 'PAN', 'CO', 'C2H6', 'C3H8', 'C2H4', 'ROHO2', 'CH3COCH3', 'C2H5O2', 'C2H5OOH', 'CH3CHO', 'CH3CO3', 'ISOP', 'ISOPO2', 'MVKMACR', 'MVKO2'</fstrat_efold_list>
<fstrat_list >''</fstrat_list>
</namelist_defaults>
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