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Add new RRSwISC6to18E3r4 ocean and sea-ice mesh #6143

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Add new RRSwISC6to18E3r4 ocean and sea-ice mesh #6143

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7973aa0
Add RRSwISC6to18E3r4 to MPAS-Ocean and -Seaice
xylar Dec 12, 2023
3191d66
Add RRSwISC6to18E3r4 to ELM
xylar Dec 12, 2023
e5a434d
Add mapping and domain files to support new RRSwISC6to18E3r4 mesh
jonbob Jan 9, 2024
19661c6
Specify coupling frequency for new RRSwISC6to18E3r4 mesh
jonbob Jan 9, 2024
b0a0c83
Add domain and mapping file support for ne120pg2_r025_RRSwISC6to18E3r4
jonbob Feb 14, 2024
415c3d1
Switch DISMF to Paolo et al. (2023)
xylar Feb 27, 2024
e72bd71
Add spunup ice and ocn ICs for RRSwISC6to18E3r4 mesh
jonbob Mar 14, 2024
4535e99
Update r025_to_RRSwISC6to18E3r4 mapping file
jonbob Mar 20, 2024
e641142
Update defaults for OCN_NCPL and CPL_SEQ_OPTION for RRSwISC6to18E3r4
jonbob Mar 20, 2024
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165 changes: 165 additions & 0 deletions cime_config/config_grids.xml
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2 changes: 1 addition & 1 deletion components/elm/bld/namelist_files/namelist_definition.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -1404,7 +1404,7 @@ Representative concentration pathway for future scenarios [radiative forcing at

<entry id="mask" type="char*20" category="default_settings"
group="default_settings"
valid_values="USGS,gx3v7,gx1v6,navy,test,tx0.1v2,tx1v1,T62,TL319,cruncep,oEC60to30v3,oEC60to30v3wLI,ECwISC30to60E1r2,EC30to60E2r2,WC14to60E2r3,WCAtl12to45E2r4,SOwISC12to60E2r4,ECwISC30to60E2r1,oRRS18to6,oRRS18to6v3,oRRS15to5,oARRM60to10,oARRM60to6,ARRM10to60E2r1,oQU480,oQU240,oQU240wLI,oQU120,oRRS30to10v3,oRRS30to10v3wLI,360x720cru,NLDASww3a,NLDAS,tx0.1v2,ICOS10,IcoswISC30E3r5">
valid_values="USGS,gx3v7,gx1v6,navy,test,tx0.1v2,tx1v1,T62,TL319,cruncep,oEC60to30v3,oEC60to30v3wLI,ECwISC30to60E1r2,EC30to60E2r2,WC14to60E2r3,WCAtl12to45E2r4,SOwISC12to60E2r4,ECwISC30to60E2r1,oRRS18to6,oRRS18to6v3,oRRS15to5,oARRM60to10,oARRM60to6,ARRM10to60E2r1,oQU480,oQU240,oQU240wLI,oQU120,oRRS30to10v3,oRRS30to10v3wLI,360x720cru,NLDASww3a,NLDAS,tx0.1v2,ICOS10,IcoswISC30E3r5,RRSwISC6to18E3r4">
Land mask description
</entry>

Expand Down
16 changes: 16 additions & 0 deletions components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -49,6 +49,7 @@
<config_dt ocn_grid="SOwISC12to60E2r4">'00:10:00'</config_dt>
<config_dt ocn_grid="ECwISC30to60E2r1">'00:30:00'</config_dt>
<config_dt ocn_grid="IcoswISC30E3r5">'00:30:00'</config_dt>
<config_dt ocn_grid="RRSwISC6to18E3r4">'00:05:00'</config_dt>
<config_time_integrator>'split_explicit_ab2'</config_time_integrator>
<config_number_of_time_levels>2</config_number_of_time_levels>

Expand All @@ -73,6 +74,7 @@
<config_hmix_scaleWithMesh ocn_grid="SOwISC12to60E2r4">.true.</config_hmix_scaleWithMesh>
<config_hmix_scaleWithMesh ocn_grid="ECwISC30to60E2r1">.true.</config_hmix_scaleWithMesh>
<config_hmix_scaleWithMesh ocn_grid="IcoswISC30E3r5">.true.</config_hmix_scaleWithMesh>
<config_hmix_scaleWithMesh ocn_grid="RRSwISC6to18E3r4">.true.</config_hmix_scaleWithMesh>
<config_maxMeshDensity>-1.0</config_maxMeshDensity>
<config_hmix_use_ref_cell_width>.false.</config_hmix_use_ref_cell_width>
<config_hmix_ref_cell_width>30.0e3</config_hmix_ref_cell_width>
Expand Down Expand Up @@ -124,6 +126,7 @@
<config_mom_del4 ocn_grid="SOwISC12to60E2r4">1.18e10</config_mom_del4>
<config_mom_del4 ocn_grid="ECwISC30to60E2r1">1.2e11</config_mom_del4>
<config_mom_del4 ocn_grid="IcoswISC30E3r5">1.2e11</config_mom_del4>
<config_mom_del4 ocn_grid="RRSwISC6to18E3r4">3.2e09</config_mom_del4>
<config_mom_del4_div_factor>1.0</config_mom_del4_div_factor>
<config_use_tracer_del4>.false.</config_use_tracer_del4>
<config_tracer_del4>0.0</config_tracer_del4>
Expand All @@ -140,6 +143,7 @@
<config_use_Redi ocn_grid="oRRS30to10v3wLI">.false.</config_use_Redi>
<config_use_Redi ocn_grid="oRRS18to6v3">.false.</config_use_Redi>
<config_use_Redi ocn_grid="oRRS15to5">.false.</config_use_Redi>
<config_use_Redi ocn_grid="RRSwISC6to18E3r4">.false.</config_use_Redi>
<config_Redi_closure>'constant'</config_Redi_closure>
<config_Redi_constant_kappa>400.0</config_Redi_constant_kappa>
<config_Redi_constant_kappa ocn_forcing="datm_forced_restoring">400.0</config_Redi_constant_kappa>
Expand Down Expand Up @@ -174,6 +178,7 @@
<config_use_GM ocn_grid="oRRS30to10v3wLI">.false.</config_use_GM>
<config_use_GM ocn_grid="oRRS18to6v3">.false.</config_use_GM>
<config_use_GM ocn_grid="oRRS15to5">.false.</config_use_GM>
<config_use_GM ocn_grid="RRSwISC6to18E3r4">.false.</config_use_GM>
<config_GM_closure>'EdenGreatbatch'</config_GM_closure>
<config_GM_closure ocn_grid="EC30to60E2r2">'constant'</config_GM_closure>
<config_GM_closure ocn_grid="WC14to60E2r3">'constant'</config_GM_closure>
Expand Down Expand Up @@ -347,6 +352,7 @@
<config_land_ice_flux_mode ocn_grid="SOwISC12to60E2r4">'pressure_only'</config_land_ice_flux_mode>
<config_land_ice_flux_mode ocn_grid="ECwISC30to60E2r1">'pressure_only'</config_land_ice_flux_mode>
<config_land_ice_flux_mode ocn_grid="IcoswISC30E3r5">'pressure_only'</config_land_ice_flux_mode>
<config_land_ice_flux_mode ocn_grid="RRSwISC6to18E3r4">'pressure_only'</config_land_ice_flux_mode>
<config_land_ice_flux_formulation>'Jenkins'</config_land_ice_flux_formulation>
<config_land_ice_flux_useHollandJenkinsAdvDiff>.false.</config_land_ice_flux_useHollandJenkinsAdvDiff>
<config_land_ice_flux_attenuation_coefficient>10.0</config_land_ice_flux_attenuation_coefficient>
Expand All @@ -360,6 +366,7 @@
<config_land_ice_flux_explicit_topDragCoeff ocn_grid="SOwISC12to60E2r4">4.48e-3</config_land_ice_flux_explicit_topDragCoeff>
<config_land_ice_flux_explicit_topDragCoeff ocn_grid="ECwISC30to60E2r1">4.48e-3</config_land_ice_flux_explicit_topDragCoeff>
<config_land_ice_flux_explicit_topDragCoeff ocn_grid="IcoswISC30E3r5">4.48e-3</config_land_ice_flux_explicit_topDragCoeff>
<config_land_ice_flux_explicit_topDragCoeff ocn_grid="RRSwISC6to18E3r4">4.48e-3</config_land_ice_flux_explicit_topDragCoeff>
<config_land_ice_flux_ISOMIP_gammaT>1e-4</config_land_ice_flux_ISOMIP_gammaT>
<config_land_ice_flux_rms_tidal_velocity>5e-2</config_land_ice_flux_rms_tidal_velocity>
<config_land_ice_flux_jenkins_heat_transfer_coefficient>0.011</config_land_ice_flux_jenkins_heat_transfer_coefficient>
Expand All @@ -368,12 +375,14 @@
<config_land_ice_flux_jenkins_heat_transfer_coefficient ocn_grid="SOwISC12to60E2r4">0.00295</config_land_ice_flux_jenkins_heat_transfer_coefficient>
<config_land_ice_flux_jenkins_heat_transfer_coefficient ocn_grid="ECwISC30to60E2r1">0.00295</config_land_ice_flux_jenkins_heat_transfer_coefficient>
<config_land_ice_flux_jenkins_heat_transfer_coefficient ocn_grid="IcoswISC30E3r5">0.00295</config_land_ice_flux_jenkins_heat_transfer_coefficient>
<config_land_ice_flux_jenkins_heat_transfer_coefficient ocn_grid="RRSwISC6to18E3r4">0.00295</config_land_ice_flux_jenkins_heat_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient>3.1e-4</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="oEC60to30v3wLI">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="ECwISC30to60E1r2">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="SOwISC12to60E2r4">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="ECwISC30to60E2r1">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="IcoswISC30E3r5">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>
<config_land_ice_flux_jenkins_salt_transfer_coefficient ocn_grid="RRSwISC6to18E3r4">8.42e-5</config_land_ice_flux_jenkins_salt_transfer_coefficient>

<!-- advection -->
<config_vert_advection_method>'flux-form'</config_vert_advection_method>
Expand All @@ -397,6 +406,7 @@
<config_implicit_top_drag_coeff ocn_grid="SOwISC12to60E2r4">4.48e-3</config_implicit_top_drag_coeff>
<config_implicit_top_drag_coeff ocn_grid="ECwISC30to60E2r1">4.48e-3</config_implicit_top_drag_coeff>
<config_implicit_top_drag_coeff ocn_grid="IcoswISC30E3r5">4.48e-3</config_implicit_top_drag_coeff>
<config_implicit_top_drag_coeff ocn_grid="RRSwISC6to18E3r4">4.48e-3</config_implicit_top_drag_coeff>
<config_loglaw_bottom_roughness>1.0e-3</config_loglaw_bottom_roughness>
<config_loglaw_layer_depth_max>10.0</config_loglaw_layer_depth_max>
<config_loglaw_bottom_drag_min>2.5e-3</config_loglaw_bottom_drag_min>
Expand Down Expand Up @@ -475,6 +485,7 @@
<config_btr_dt ocn_grid="SOwISC12to60E2r4">'0000_00:00:15'</config_btr_dt>
<config_btr_dt ocn_grid="ECwISC30to60E2r1">'0000_00:01:15'</config_btr_dt>
<config_btr_dt ocn_grid="IcoswISC30E3r5">'0000_00:01:00'</config_btr_dt>
<config_btr_dt ocn_grid="RRSwISC6to18E3r4">'0000_00:00:10'</config_btr_dt>
<config_n_btr_cor_iter>2</config_n_btr_cor_iter>
<config_vel_correction>.true.</config_vel_correction>
<config_btr_subcycle_loop_factor>2</config_btr_subcycle_loop_factor>
Expand Down Expand Up @@ -516,6 +527,7 @@
<config_check_ssh_consistency ocn_grid="SOwISC12to60E2r4">.false.</config_check_ssh_consistency>
<config_check_ssh_consistency ocn_grid="ECwISC30to60E2r1">.false.</config_check_ssh_consistency>
<config_check_ssh_consistency ocn_grid="IcoswISC30E3r5">.false.</config_check_ssh_consistency>
<config_check_ssh_consistency ocn_grid="RRSwISC6to18E3r4">.false.</config_check_ssh_consistency>
<config_filter_btr_mode>.false.</config_filter_btr_mode>
<config_prescribe_velocity>.false.</config_prescribe_velocity>
<config_prescribe_thickness>.false.</config_prescribe_thickness>
Expand Down Expand Up @@ -1033,6 +1045,7 @@
<config_AM_mocStreamfunction_enable ocn_grid="SOwISC12to60E2r4">.true.</config_AM_mocStreamfunction_enable>
<config_AM_mocStreamfunction_enable ocn_grid="ECwISC30to60E2r1">.true.</config_AM_mocStreamfunction_enable>
<config_AM_mocStreamfunction_enable ocn_grid="IcoswISC30E3r5">.true.</config_AM_mocStreamfunction_enable>
<config_AM_mocStreamfunction_enable ocn_grid="RRSwISC6to18E3r4">.true.</config_AM_mocStreamfunction_enable>
<config_AM_mocStreamfunction_compute_interval>'0000-00-00_01:00:00'</config_AM_mocStreamfunction_compute_interval>
<config_AM_mocStreamfunction_output_stream>'mocStreamfunctionOutput'</config_AM_mocStreamfunction_output_stream>
<config_AM_mocStreamfunction_compute_on_startup>.true.</config_AM_mocStreamfunction_compute_on_startup>
Expand Down Expand Up @@ -1115,16 +1128,19 @@
<config_AM_conservationCheck_enable ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="RRSwISC6to18E3r4">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_compute_interval>'dt'</config_AM_conservationCheck_compute_interval>
<config_AM_conservationCheck_output_stream>'conservationCheckOutput'</config_AM_conservationCheck_output_stream>
<config_AM_conservationCheck_compute_on_startup>.false.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="RRSwISC6to18E3r4">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_write_on_startup>.false.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="RRSwISC6to18E3r4">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_to_logfile>.true.</config_AM_conservationCheck_write_to_logfile>
<config_AM_conservationCheck_restart_stream>'conservationCheckRestart'</config_AM_conservationCheck_restart_stream>

Expand Down
38 changes: 26 additions & 12 deletions components/mpas-ocean/cime_config/buildnml
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Original file line number Diff line number Diff line change
Expand Up @@ -296,6 +296,20 @@ def buildnml(case, caseroot, compname):
if ocn_ismf == 'data':
data_ismf_file = 'prescribed_ismf_adusumilli2020.IcoswISC30E3r5.20231120.nc'

elif ocn_grid == 'RRSwISC6to18E3r4':
decomp_date = '20240105'
decomp_prefix = 'partitions/mpas-o.graph.info.'
restoring_file = 'sss.PHC2_monthlyClimatology.RRSwISC6to18E3r4.20240105.nc'
analysis_mask_file = 'RRSwISC6to18E3r4_mocBasinsAndTransects20210623.nc'
ic_date = '20240105'
ic_prefix = 'mpaso.RRSwISC6to18E3r4'
if ocn_ic_mode == 'spunup':
ic_date = '20240110'
ic_prefix = 'mpaso.RRSwISC6to18E3r4.rstFromG-chrysalis'
if ocn_ismf == 'data':
data_ismf_file = 'prescribed_ismf_paolo2023.RRSwISC6to18E3r4.20240227.nc'


#--------------------------------------------------------------------
# Set OCN_FORCING = datm_forced_restoring if restoring file is available
#--------------------------------------------------------------------
Expand Down Expand Up @@ -422,7 +436,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<immutable_stream name="mesh"')
lines.append(' type="none"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand All @@ -431,7 +445,7 @@ def buildnml(case, caseroot, compname):
lines.append('/>')
lines.append('<immutable_stream name="input"')
lines.append(' type="input"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand All @@ -452,7 +466,7 @@ def buildnml(case, caseroot, compname):
lines.append('-->')
lines.append('<immutable_stream name="restart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand All @@ -471,7 +485,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="output"')
lines.append(' type="output"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand Down Expand Up @@ -755,7 +769,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="eddyProductVariablesOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand Down Expand Up @@ -1135,7 +1149,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand Down Expand Up @@ -1181,7 +1195,7 @@ def buildnml(case, caseroot, compname):
lines.append(' <var name="atmosphericPressure"/>')
lines.append(' <var name="normalMLEvelocity"/>')
lines.append(' <var name="vertMLEBolusVelocityTop"/>')
if not ocn_grid.startswith("oRRS1"):
if not (ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6")):
lines.append(' <var name="normalGMBolusVelocity"/>')
lines.append(' <var name="vertGMBolusVelocityTop"/>')
lines.append(' <var name="cGMphaseSpeed"/>')
Expand Down Expand Up @@ -1362,7 +1376,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyMaxOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand Down Expand Up @@ -1424,7 +1438,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyMinOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand Down Expand Up @@ -1527,7 +1541,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand All @@ -1543,7 +1557,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyMaxRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
Expand All @@ -1559,7 +1573,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyMinRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1"):
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
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