Code

Initial icepack integration#5958

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jonbob merged 169 commits intoE3SM-Project:masterE3SM-Project/E3SM:masterfrom eclare108213:eclare108213/seaice/icepack-integrationeclare108213/E3SM:eclare108213/seaice/icepack-integrationCopy head branch name to clipboardOct 31, 2023

+19,878-762

Commits

Commits on Dec 5, 2022

• add icepack submodule

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• Merge branch 'eclare108213/seaice/icepack-integration' of github.com:eclare108213/E3SM into eclare108213/seaice/icepack-integration

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• remove extraneous Icepack entry from .gitmodules

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• compile icepack with cmake

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Commits on Dec 7, 2022

• Merge branch 'E3SM-Project:master' into eclare108213/seaice/icepack-integration

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• Merge branch 'E3SM-Project:master' into eclare108213/seaice/icepack-integration

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Commits on Dec 9, 2022

• Initial integration of Icepack into MPAS-Seaice

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• Changes needed for BFB icepack/column pckg shortwave

  

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• Add namelist option to run with either icepack or column package

  

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• Update icepack interface for newer icepack commit

  

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• Changes for e3sm build

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• Minor changes for existing E3SM consistency

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• Removing duplicate use calls

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• Adding new config_column_physics_type namelist option to E3SM build namelist

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• Additional changes for E3SM build namelist

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• Correcting erroneous 'use' in new namelist option

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• Correcting new namelist option type

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• Adding ifdefs to turn off icepack_step_radiation even when icepack is set to be on

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Commits on Dec 13, 2022

• Changing 'gregorian_noleap' to 'noleap'

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• Changes to config_shortwave_type for icepack

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Commits on Dec 15, 2022

• Changing tmp config shortwave_type to pointer

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• Adding local use_snow logical

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• Adding missing config_use_snicar_ad pool call

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• Fixing location of use_snow local logical, removing unused config_snicar_ad calls

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• Reverting addition of ifdef statements

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Commits on Dec 16, 2022

• Merge pull request #1 from darincomeau/cherry-pick-from-akt

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Commits on Dec 19, 2022

• update from E3SM master

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• Merge pull request #2 from eclare108213/update_E3SM_2

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• updating icepack to latest version, cice-consortium/E3SM-icepack-initial-integration branch

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• Merge pull request #3 from eclare108213/update_icepack_1

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Commits on Dec 20, 2022

• allocate rsnow for use in icepack

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Commits on Dec 22, 2022

• Merge pull request #4 from eclare108213/allocate_rsnow

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Commits on Jan 13, 2023

• Merge branch 'master' of github.com:E3SM-Project/E3SM into update_E3SM_3

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• Merge pull request #5 from eclare108213/update_E3SM_3

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Commits on Feb 2, 2023

• initial shortwave module changes

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Commits on Feb 22, 2023

• Added step_therm1 from icepack to MPAS-Seaice

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Commits on Mar 31, 2023

• Merge branch 'akturner/seaice/icepack-step-therm1-integration' of github.com:akturner/E3SM into vertical_thermo

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• add config_salt_flux_coupling_type to namelist files

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• add config_floeshape and config_floediam to build-namelist

  

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• fix accidentally deleted code

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• add floeshape and floediam namelist options to build-namelist-group-list and build-namelist-section

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• add default values for floeshape(0.66) and floediam(300.0) to namelist_defaults_mpassi.xml

  

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• add floeshape and floediam definitions to namelist_definition_mpassi.xml

  

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• add floeshape and floediam namelist options to registry.xml

  

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Commits on Apr 1, 2023

• constants and configs; update config_atmos_boundary_method values

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• Merge pull request #9 from erinethomas/namelistMods_floediam_floeshape

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Commits on Apr 3, 2023

• Initialize Icepack constants using (E3SM/SHR) values in ice_constants_colpkg.F90

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• Merge pull request #10 from eclare108213/set_parameters

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• Update branch from eclare108213/seaice/icepack-integration

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Commits on Apr 4, 2023

• Move icepack_configure call earlier in the initialization. Clean up.

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• fix spelling error in comment

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Commits on Apr 6, 2023

• Update Icepack integration, mpas_seaice_icepack.F

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• clean up associated with rebase

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Commits on Apr 8, 2023

• Merge pull request #12 from apcraig/snicarad

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Commits on Apr 9, 2023

• Merge icepack-integration PR#12 and add warnings calls for therm1

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Commits on Apr 10, 2023

• Merge pull request #11 from eclare108213/vertical_thermo

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Commits on Apr 12, 2023

• Merge remote-tracking branch 'e3sm/master' into icepack-integration-merge-20230412

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Commits on Apr 14, 2023

• Merge pull request #15 from darincomeau/icepack-integration-merge-20230412

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• updating Icepack to hash 6ca316f, adding wlat for FSD

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Commits on Apr 28, 2023

• Adds changes for consistency with icepack and bugfix for boundary layer

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• Merge pull request #17 from E3SM-Project/njeffery/seaice/eclare-update-icepack-2

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Commits on May 25, 2023

• Merge commit '01e5f2a4f265976526e7aad67bd47b6efd98fa44' of github.com:eclare108213/E3SM into update_icepack_2

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• adding missing constants definitions for column configuration

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Commits on May 26, 2023

• Merge pull request #16 from eclare108213/update_icepack_2

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Commits on May 27, 2023

• updating Icepack to hash 2fc81b4

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Commits on May 31, 2023

• Merge pull request #18 from eclare108213/update_icepack_3

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Commits on Jun 1, 2023

• activate snicar in icepack, check values

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Commits on Jun 2, 2023

• Initial integration of icepack step_ridge

  

  darincomeau

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• Adding missing Tf argument to icepack_step_ridge call

  

  darincomeau

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  eclare108213

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• clean up warning and abort

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• Merge pull request #20 from eclare108213/mechred

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Commits on Jun 13, 2023

• add -DUSE_SNICARHC for standalone testing

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Commits on Jun 15, 2023

• Merge pull request #19 from eclare108213/snicar_active

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Commits on Jul 7, 2023

• updating Icepack to hash b2b8066

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• Merge pull request #22 from eclare108213/update_icepack_4

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Commits on Jul 12, 2023

• Corrects use of snow flags and adds flag consistency checks

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• Put snow flag consistency checks in mpas_seaice_icepack

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Commits on Jul 13, 2023

• Merge pull request #23 from eclare108213/njeffery/seaice/add-step-snow-icepack

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Commits on Jul 19, 2023

• updating Icepack to #e8e7d7d

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Commits on Jul 20, 2023

• Merge pull request #24 from eclare108213/update_icepack_5

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Commits on Jul 23, 2023

• step_therm2 integration, bug fix in column

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• revert ice_itd.F90 for CICE-QC testing

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Commits on Jul 27, 2023

• uncomment column itd changes, and informational comments

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Commits on Jul 28, 2023

• Merge pull request #25 from eclare108213/thermo_itd2

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Commits on Aug 14, 2023

• Adds mpassi-icepack interface for snow flag options

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Commits on Aug 21, 2023

• updating Icepack to hash e751022

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• Merge pull request #27 from eclare108213/update_icepack_6

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Commits on Aug 22, 2023

• Change colpkg_ to icepack_ for init_itd, ice_strength; remove colpkg_init_thermo, _init_orbit, _step_ridge

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• call icepack_aggregate, clean up warnings calls, remove commented-out code

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• replace colpkg_ with icepack_ for sea_freezing_temperature, liquidus_temperature, enthalpy_snow; remove commented-out code

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Commits on Aug 23, 2023

• remove seaice_column_ocean_mixed_layer; inline colpkg_enthalpy_snow, colpkg_salinity_profile; clean up

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Commits on Aug 24, 2023

• Merge pull request #28 from eclare108213/oddsandends1

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• Merge step-snow interface changes with current integration branch

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Commits on Aug 25, 2023

• Changes the name of a snow config option

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Commits on Aug 29, 2023

• Moved get arrays outside of the if restart loop.

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Commits on Sep 1, 2023

• Merge pull request #29 from E3SM-Project/njeffery/seaice/merge-snow-integration-master

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Commits on Sep 15, 2023

• updating Icepack to hash cb0d946; fixes water and salt mass conservation error

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• add config_frazil_coupling_type (cpl_frazil in icepack)

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• fix Registry description field

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Commits on Sep 18, 2023

• Merge pull request #30 from eclare108213/update_icepack_7

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• Remove redundant column package tracer code

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Commits on Sep 19, 2023

• cleanup column -> icepack, BFB

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Commits on Sep 20, 2023

• Merge pull request #31 from eclare108213/tracers1

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• Merge remote-tracking branch 'e3sm/master' into icepack-integration-merge-20230920

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Commits on Sep 21, 2023

• Update to allow compilation and running within existing constant regime

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• interim commit, builds, runs, BFB

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• interim commit, BFB

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• interim commit, BFB

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Commits on Sep 22, 2023

• Merge pull request #32 from darincomeau/icepack-integration-merge-20230920

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• cleaning up

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• Merge branch 'move_constants' of github.com:eclare108213/E3SM into move_constants2 to capture update from E3SM/master

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Commits on Sep 23, 2023

• define a few more constants in MPAS-SI, clean up

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• use seaice_constants instead of ice_constants_colpkg

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• Merge pull request #33 from eclare108213/move_constants2

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Commits on Sep 24, 2023

• optionally call icepack routines; fix threading bug

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• optionally call icepack routines; clean up constants

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Commits on Sep 25, 2023

• simplify icepack interface in MPAS-SI driver modules

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• call icepack interface routines directly with warnings call; clean up

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Commits on Sep 26, 2023

• updating Icepack to hash 78286bf

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• Merge pull request #34 from eclare108213/prescribedice1

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Commits on Sep 28, 2023

• components/mpas-seaice/bld/build-namelist

  

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• components/mpas-seaice/bld/build-namelist-section

  

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• components/mpas-seaice/bld/namelist_files/namelist_defaults_mpassi.xml

  

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• components/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xml

  

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• components/mpas-seaice/bld/namelist_files/namelist_definition_mpassi.xml

  

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• abort if FSD turned on.

  

  Erin Thomas

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• Add floe size distribution namelist option to registry

  

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• Updated to include dimension namelist option for the floe size

  

  Andrew Roberts

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• Merge pull request #36 from erinethomas/FSD_flag_only

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• additional calls to icepack instead of colpkg. BFB

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Commits on Sep 29, 2023

• unify pi. BFB

  eclare108213

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• deprecate cesm ponds

  eclare108213

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• deprecate 0-layer thermo and zsalinity (partially). BFB

  eclare108213

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• check emissivity value when coupled; update authorship. BFB

  eclare108213

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• fix config checks and comments for deprecated code. BFB

  eclare108213

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• wrap use shr_const_mod in coupled ifdef

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• add line continuation for standalone constants

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• update Makefile and constants for standalone

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Commits on Sep 30, 2023

• specify string length for icepack warnings

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• Merge pull request #37 from eclare108213/physics_cleanup

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Commits on Oct 1, 2023

• updating Icepack to has 96f2fc7

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• Merge pull request #38 from eclare108213/update_icepack_8

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• rename config_pond_flushing_timescale, fix spelling in config_ridiging_efolding_scale

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• add shortwave redistribution config options

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Commits on Oct 2, 2023

• add config_macro_drainage_timescale

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Commits on Oct 3, 2023

• Merge pull request #39 from eclare108213/add_configs

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Commits on Oct 6, 2023

• Switch to dragio being declared as config_ice_ocean_drag_coefficient rather than an internal constant

  

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• Corrections to ColPkg warning messages

  

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• Removed double accounting for FSD

  

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• Code fix for log write

  

  Andrew Roberts

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• Addition of config_snow_thermal_conductivity namelist option

  

  Andrew Roberts

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• Correction, adding snow thermal conductivity to column package iniatialization

  

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• Addition of comment in constants

  

  Andrew Roberts

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• Corrected warning write statement for ksno

  

  Andrew Roberts

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Commits on Oct 8, 2023

• Further addition of config_ice_ocean_drag_coefficient and config_snow_thermal_conductivity

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• Bug fix - removal of line continuation

  

  Andrew Roberts

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• Replace config_use_column_package with config_use_column_physics to avoid confusion with Icepack

  

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Commits on Oct 9, 2023

• Merge pull request #40 from eclare108213/mpas_namelist

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• Merge pull request #41 from eclare108213/config_colpkg_physics

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Commits on Oct 10, 2023

• make Icepack the default column physics package

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• Merge branch 'eclare108213/seaice/icepack-integration' of github.com:eclare108213/E3SM into icepack_default

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• Merge pull request #42 from eclare108213/icepack_default

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Commits on Oct 13, 2023

• updating icepack to hash 8fad768 on main

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• Merge pull request #43 from eclare108213/move_submodule

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Commits on Oct 20, 2023

• Fix to prescribed ice mode for F-case simulations

  

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• Merge pull request #44 from eclare108213/proteanplanet/seaice/prescribed

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Commits on Oct 25, 2023

• Move some description changes from bld files to Registry

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• Update bld files to match Registry changes, using automated scripts

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Commits on Oct 26, 2023

• Merge pull request #45 from eclare108213/jonbob/seaice/update-bld-files

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