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Fix bug in p3/shoc run_and_cmp #131

Fix bug in p3/shoc run_and_cmp

Fix bug in p3/shoc run_and_cmp #131

name: eamxx-v1
on:
# Runs on PRs against master
pull_request:
branches: [ master ]
types: [opened, synchronize, ready_for_review, reopened]
paths:
# first, yes to these
- '.github/workflows/eamxx-v1-testing.yml'
- 'cime_config/machine/config_machines.xml'
- 'components/eamxx/**'
- 'components/homme/**'
- 'externals/ekat'
- 'externals/scorpio'
# second, no to these
- '!components/eamxx/docs/**'
- '!components/eamxx/mkdocs.yml'
# Manual run is used to bless
workflow_dispatch:
inputs:
job_to_run:
description: 'Job to run'
required: true
type: choice
options:
- cpu-gcc
- all
bless:
description: 'Generate baselines'
required: true
type: boolean
concurrency:
# Two runs are in the same group if they are testing the same git ref
# - if trigger=pull_request, the ref is refs/pull/<PR_NUMBER>/merge
# - for other triggers, the ref is the branch tested
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
# Submit to cdash only for nightlies or if the user explicitly forced a submission via workflow dispatch
submit: ${{ github.event_name == 'schedule' || (github.event_name == 'workflow_dispatch' && inputs.submit) }}
# Generate only if user requested via workflow_dispatch
generate: ${{ github.event_name == 'workflow_dispatch' && inputs.bless }}
# Correct case folder suffix for generate/compare, used to find files to upload as artifacts
folder_suffix: ${{ github.event_name == 'workflow_dispatch' && inputs.bless && '.G' || '.C' }}
# Compare/generate flags for create_test
flags: ${{ github.event_name == 'workflow_dispatch' && inputs.bless && '-o -g -b master' || '-c -b master' }}
jobs:
cpu-gcc:
if: |
${{
github.event_name != 'workflow_dispatch' ||
(
github.event.inputs.job_to_run == 'cpu-gcc' ||
github.event.inputs.job_to_run == 'all'
)
}}
runs-on: [self-hosted, gcc, ghci-snl-cpu]
strategy:
matrix:
test:
- full_name: ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.ghci-snl-cpu_gnu.scream-output-preset-2
short_name: ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.scream-output-preset-2
- full_name: ERS_P16_Ln22.ne30pg2_ne30pg2.FIOP-SCREAMv1-DP.ghci-snl-cpu_gnu.scream-dpxx-arm97
short_name: ERS_P16_Ln22.ne30pg2_ne30pg2.FIOP-SCREAMv1-DP.scream-dpxx-arm97
- full_name: ERS_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.ghci-snl-cpu_gnu.scream-small_kernels--scream-output-preset-5
short_name: ERS_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.scream-small_kernels--scream-output-preset-5
- full_name: SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.ghci-snl-cpu_gnu.scream-mam4xx-all_mam4xx_procs
short_name: SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.scream-mam4xx-all_mam4xx_procs
fail-fast: false
name: cpu-gcc / ${{ matrix.test.short_name }}
steps:
- name: Check out the repository
uses: actions/checkout@v4
with:
persist-credentials: false
show-progress: false
submodules: recursive
- name: Show action trigger
uses: ./.github/actions/show-workflow-trigger
- name: Set CA certificates env var
run: |
# Ensure the operating system is Linux
if [ "$(uname)" != "Linux" ]; then
echo "This action only supports Linux."
exit 1
fi
# Set env var to be used in upload-artifacts phase
if [ -f /etc/debian_version ]; then
echo "NODE_EXTRA_CA_CERTS=/etc/ssl/certs/ca-certificates.crt" >> $GITHUB_ENV
elif [ -f /etc/redhat-release ] || [ -f /etc/centos-release ] || [ -f /etc/fedora-release ]; then
echo "NODE_EXTRA_CA_CERTS=/etc/pki/tls/certs/ca-bundle.crt" >> $GITHUB_ENV
else
echo "Unsupported Linux distribution"
exit 1
fi
- name: Run test
run: |
./cime/scripts/create_test ${{ matrix.test.full_name }} ${{ env.flags }} --wait
- name: Upload case files
if: ${{ always() }}
uses: actions/upload-artifact@v4
with:
name: ${{ matrix.test.full_name }}
path: |
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/TestStatus.log
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/bld/*.bldlog.*
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/bld/case2bld/*.bldlog.*
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/*.log.*
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/case2run/*.log.*
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/*.cprnc.out
/projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/case2run/*.cprnc.out
env:
NODE_EXTRA_CA_CERTS: ${{ env.NODE_EXTRA_CA_CERTS }}
- name: Clean up
if: ${{ always() }}
run: |
rm -rf /projects/e3sm/scratch/${{ matrix.test.full_name }}*