sync re sites on load

Cargo.toml

@@ -68,8 +68,8 @@ ureq = { version = "^2.10.1", features = ["tls"], default-features = false }  #
 strum = "^0.26.3"
 strum_macros = "^0.26.4"
 
-na_seq = { path = "../na_seq" }
-#na_seq = "^0.2.0"
+#na_seq = { path = "../na_seq" }
+na_seq = "^0.2.1"
 
 [build-dependencies]
 # These are for embedding an application icon, on Windows.

src/gui/cloning.rs

@@ -365,7 +365,7 @@ pub fn cloning_page(state: &mut State, ui: &mut Ui) {
     ScrollArea::vertical().id_salt(100).show(ui, |ui| {
         let mut sync = false;
 
-        ui.heading("Cloning");
+        ui.heading("Cloning (Currently supports PCR-based cloning only");
         //     ui.label("For a given insert, automatically select a backbone, and either restriction enzymes, or PCR primers to use\
         // to clone the insert into the backbone.");
 

src/gui/input.rs

@@ -13,7 +13,7 @@ use crate::{
 };
 
 /// Handle hotkeys and clicks that affect all pages.
-fn handle_global(state: &mut State, ip: &InputState){
+fn handle_global(state: &mut State, ip: &InputState) {
     if ip.key_pressed(Key::A) && ip.modifiers.ctrl && !state.ui.text_edit_active {
         if !state.get_seq().is_empty() {
             state.ui.text_selection = Some(RangeIncl::new(1, state.get_seq().len()))
@@ -167,7 +167,7 @@ pub fn handle_input(state: &mut State, ui: &mut Ui) {
                     }
 
                     let i = i + 1; // Insert after this nucleotide; not before.
-                    // Don't allow accidental nt insertion when the user is entering into the search bar.
+                                   // Don't allow accidental nt insertion when the user is entering into the search bar.
 
                     // Add NTs.
                     if ip.key_pressed(Key::A) && !ip.modifiers.ctrl {

src/gui/mod.rs

@@ -328,7 +328,11 @@ pub fn draw(state: &mut State, ctx: &Context) {
                 ("🔓", Color32::from_rgb(255, 210, 140))
             };
             // todo: IDeally bigger font size, but without making the whole line take up more vertical space.
-            if ui.button(RichText::new(lock_text).color(lock_color)).on_hover_text("Prevent edits to the sequence").clicked() {
+            if ui
+                .button(RichText::new(lock_text).color(lock_color))
+                .on_hover_text("Prevent edits to the sequence")
+                .clicked()
+            {
                 state.ui.seq_edit_lock = !state.ui.seq_edit_lock;
             }
 

src/gui/protein.rs

@@ -27,6 +27,8 @@ const CHART_HEIGHT: f32 = 200.;
 const CHART_LINE_WIDTH: f32 = 2.;
 const CHART_LINE_COLOR: Color32 = Color32::from_rgb(255, 100, 100);
 
+const NUM_X_TICKS: usize = 12;
+
 // todo: Color-code AAs, start/stop codons etc.
 
 // todo: Eval how cacheing and state is handled.
@@ -84,7 +86,11 @@ fn hydrophobicity_chart(data: &Vec<(usize, f32)>, ui: &mut Ui) {
             let line = Shape::Path(PathShape::line(points, stroke));
 
             let mut x_axis = Vec::new();
-            const NUM_X_TICKS: usize = 12;
+
+            if data.len() == 0 {
+                return;
+            }
+
             let data_range = data[data.len() - 1].0 - data[0].0;
             let dr_nt = data_range / NUM_X_TICKS;
 

src/main.rs

@@ -64,12 +64,11 @@ use crate::{
     misc_types::{find_search_matches, FeatureDirection, FeatureType, SearchMatch, MIN_SEARCH_LEN},
     pcr::{PcrParams, PolymeraseType},
     portions::PortionsState,
-    primer::TM_TARGET,
+    primer::{Primer, TM_TARGET},
     protein::{proteins_from_seq, sync_cr_orf_matches},
     tags::TagMatch,
     util::{get_window_title, RangeIncl},
 };
-use crate::primer::Primer;
 
 mod alignment;
 mod amino_acids;
@@ -800,16 +799,14 @@ impl State {
     pub fn sync_seq_related(&mut self, primer_i: Option<usize>) {
         self.sync_primer_matches(primer_i);
 
-        // todo: We have removed this here for now, because it is slow.
-        // todo: Make sure, elsewhere, this is synced.
+        // We have removed RE sync here for now, because it is slow. Call  when able.
         // self.sync_re_sites();
 
         self.sync_reading_frame();
         self.sync_search();
 
         sync_cr_orf_matches(self);
 
-
         self.volatile[self.active].proteins = proteins_from_seq(
             self.get_seq(),
             &self.generic[self.active].features,
@@ -849,6 +846,8 @@ impl State {
         self.sync_pcr();
         self.sync_primer_metrics();
         self.sync_seq_related(None);
+        self.sync_re_sites();
+
         self.ui.seq_input = seq_to_str(self.get_seq());
 
         self.sync_portions();