AJ-1428: update various actions to latest (#407)

update various actions to latest
DataBiosphere · Nov 13, 2023 · 0def2c7 · 0def2c7
1 parent d9d9099
commit 0def2c7
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Showing 9 changed files with 86 additions and 86 deletions.
diff --git a/.github/workflows/build-and-integration-test.yml b/.github/workflows/build-and-integration-test.yml
@@ -9,9 +9,9 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
@@ -37,8 +37,8 @@ jobs:
         ports: [ "5432:5432" ]
 
     steps:
-      - uses: actions/checkout@v3
-          
+      - uses: actions/checkout@v4
+
       - name: Install pg_dump
         run: sudo apt install postgresql-14 postgresql-contrib
 
@@ -48,7 +48,7 @@ jobs:
         run: psql -h 127.0.0.1 -U postgres -f ./local-dev/local-postgres-init.sql
 
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
@@ -67,7 +67,7 @@ jobs:
 
       - name: Upload Test Reports
         if: always()
-        uses: actions/upload-artifact@v1
+        uses: actions/upload-artifact@v3
         with:
           name: Test Reports
           path: service/build/reports
diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml
@@ -11,9 +11,9 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
@@ -39,7 +39,7 @@ jobs:
         ports: [ "5432:5432" ]
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         # Needed by sonar to get the git history for the branch the PR will be merged into.
         with:
           fetch-depth: 0
@@ -50,7 +50,7 @@ jobs:
         run: psql -h 127.0.0.1 -U postgres -f ./local-dev/local-postgres-init.sql
 
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
@@ -83,7 +83,7 @@ jobs:
 
       - name: Upload Test Reports
         if: always()
-        uses: actions/upload-artifact@v1
+        uses: actions/upload-artifact@v3
         with:
           name: Test Reports
           path: service/build/reports
diff --git a/.github/workflows/publish-docker.yml b/.github/workflows/publish-docker.yml
@@ -29,7 +29,7 @@ jobs:
       id-token: 'write'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up JDK 17
         uses: actions/setup-java@v3
         with:
@@ -43,7 +43,7 @@ jobs:
           JIRA_ID=$(echo "${{ inputs.jiraId }}" | grep -iEo -m 1 'AJ-[0-9]+' | head -1 || '')
           if [[ -z "$JIRA_ID" ]]; then
             echo "JIRA_ID=missing" >> $GITHUB_OUTPUT
-          else 
+          else
             echo "JIRA_ID=${JIRA_ID}" >> $GITHUB_OUTPUT
           fi
           set -e
@@ -68,13 +68,13 @@ jobs:
       - name: Explicitly auth Docker for GCR
         run: gcloud auth configure-docker --quiet
 
-      - name: Build WDS base Docker image 
+      - name: Build WDS base Docker image
         run: docker build -f Dockerfile --no-cache -t wdsbase:snapshot .
 
-      - name: Tag WDS base Docker image 
+      - name: Tag WDS base Docker image
         run: docker tag wdsbase:snapshot us.gcr.io/broad-dsp-gcr-public/debian/wds-debian-pg-dump:latest
 
-      - name: Push WDS base Docker image 
+      - name: Push WDS base Docker image
         run: docker push us.gcr.io/broad-dsp-gcr-public/debian/wds-debian-pg-dump:latest
 
       - name: Construct GCR docker image name
@@ -117,7 +117,7 @@ jobs:
           docker push --all-tags ${{ steps.acr-image-name.outputs.name }}
 
       - name: Clone terra-helmfile
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           repository: broadinstitute/terra-helmfile
           token: ${{ secrets.BROADBOT_TOKEN }} # Has to be set at checkout AND later when pushing to work

diff --git a/.github/workflows/publish-java-client.yml b/.github/workflows/publish-java-client.yml
@@ -14,7 +14,7 @@ jobs:
         jakarta: [ true, false ]
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up JDK 17
         uses: actions/setup-java@v3
         with:
@@ -27,7 +27,7 @@ jobs:
           path: ~/.gradle/caches
           key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
           restore-keys: ${{ runner.os }}-gradle
-        
+
       - name: Build all projects without running tests
         run: ./gradlew --build-cache build -x test
 

diff --git a/.github/workflows/publish-pacts.yml b/.github/workflows/publish-pacts.yml
@@ -24,7 +24,7 @@ jobs:
       repo-version: ${{ steps.extract-branch.outputs.repo-version }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Extract branch
         id: extract-branch
@@ -61,7 +61,7 @@ jobs:
       - name: Checkout current code
         uses: actions/checkout@v4
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'

diff --git a/.github/workflows/release-python-client.yml b/.github/workflows/release-python-client.yml
@@ -14,7 +14,7 @@ jobs:
   build-n-publish:
     name: Build, test and publish Python client to PyPI
     runs-on: ubuntu-latest
-    
+
     services:
       postgres:
         image: postgres:14
@@ -26,10 +26,10 @@ jobs:
           --health-timeout 5s
           --health-retries 5
         ports: [ "5432:5432" ]
-    
+
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -39,7 +39,7 @@ jobs:
           python-version: 3.8
 
       - name: Use Node.js ${{matrix.node-version }}
-        uses: actions/setup-node@v2
+        uses: actions/setup-node@v4
         with:
           node-version: 18
 
@@ -62,56 +62,56 @@ jobs:
         working-directory: ./wds-client
         run: |
           pip install .
-          
+
       - name: Initialize Postgres DB
         env:
           PGPASSWORD: postgres
         run: psql -h 127.0.0.1 -U postgres -f ./local-dev/local-postgres-init.sql
-        
+
       - name: Mock Sam via command-line docker run
         run: |
-          docker run -v ${{ github.workspace }}/service/src/test/resources/nginx.conf:/etc/nginx/nginx.conf:ro -p 9889:80 -d nginx:1.23.3       
+          docker run -v ${{ github.workspace }}/service/src/test/resources/nginx.conf:/etc/nginx/nginx.conf:ro -p 9889:80 -d nginx:1.23.3
 
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
           cache: 'gradle'
-      
+
       - name: Run WDS service and tests
         run: |
-            export SAM_URL=http://localhost:9889
-            export DATA_REPO_URL=http://localhost:9889
-            export WORKSPACE_MANAGER_URL=http://localhost:9889
-            export WORKSPACE_ID=123e4567-e89b-12d3-a456-426614174000
-            ./gradlew --build-cache build -x test
-            ./gradlew bootRun &
-            count=20
-            until $(curl --output /dev/null --silent --head --fail http://localhost:8080/status); do
-              printf '.'
-              sleep 1
-              count=$(expr $count - 1) 
-              if [ "$count" -eq "0" ]; then
-                echo "WDS is not responding, exit action."
-                exit
-              fi
-            done
-            pip install pytest
-            pytest service/src/test/python/test.py
-     
+          export SAM_URL=http://localhost:9889
+          export DATA_REPO_URL=http://localhost:9889
+          export WORKSPACE_MANAGER_URL=http://localhost:9889
+          export WORKSPACE_ID=123e4567-e89b-12d3-a456-426614174000
+          ./gradlew --build-cache build -x test
+          ./gradlew bootRun &
+          count=20
+          until $(curl --output /dev/null --silent --head --fail http://localhost:8080/status); do
+            printf '.'
+            sleep 1
+            count=$(expr $count - 1)
+            if [ "$count" -eq "0" ]; then
+              echo "WDS is not responding, exit action."
+              exit
+            fi
+          done
+          pip install pytest
+          pytest service/src/test/python/test.py
+
       - name: Install pypa/build
         if: ${{ github.ref_name == 'main' }}
         working-directory: ./wds-client
         run: >-
           python -m pip install build --user
-      
+
       - name: Build a binary wheel and a source tarball
         if: ${{ github.ref_name == 'main' }}
         working-directory: ./wds-client
         run: >-
           python -m build --sdist --wheel --outdir dist/ .
-          
+
       - name: Publish distribution to PyPI
         if: ${{ github.ref_name == 'main' }}
         uses: broadinstitute/gh-action-pypi-publish@master

diff --git a/.github/workflows/run-e2e-tests.yaml b/.github/workflows/run-e2e-tests.yaml
@@ -26,7 +26,7 @@ jobs:
       project-name: '${{ steps.gen.outputs.project_name }}'
       bee-name: '${{ env.BEE_NAME }}'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Generate a random billing project name
         id: gen
         run: |
@@ -46,15 +46,15 @@ jobs:
           ref: refs/heads/main
           token: '${{ env.TOKEN }}'
           inputs: >-
-            { 
-            "bee-name": "${{ env.BEE_NAME }}", 
+            {
+            "bee-name": "${{ env.BEE_NAME }}",
             "bee-template-name":
-            "rawls-e2e-azure-tests", 
-            "version-template": "dev" 
+            "rawls-e2e-azure-tests",
+            "version-template": "dev"
             }
   attach-landing-zone-to-bee-workflow:
     runs-on: ubuntu-latest
-    needs: [init-github-context, create-bee-workflow, params-gen]
+    needs: [ init-github-context, create-bee-workflow, params-gen ]
     steps:
       - name: dispatch to terra-github-workflows
         uses: broadinstitute/workflow-dispatch@v3
@@ -64,10 +64,10 @@ jobs:
           ref: refs/heads/main
           token: '${{ env.TOKEN }}'
           inputs: >-
-            { 
-            "bee-name": "${{ env.BEE_NAME }}", 
-            "billing-project": "${{needs.params-gen.outputs.project-name }}", 
-            "service-account": "[email protected]" 
+            {
+            "bee-name": "${{ env.BEE_NAME }}",
+            "billing-project": "${{needs.params-gen.outputs.project-name }}",
+            "service-account": "[email protected]"
             }
   run-e2e-test-job:
     needs:

diff --git a/.github/workflows/submit-dependencies.yml b/.github/workflows/submit-dependencies.yml
@@ -12,10 +12,10 @@ jobs:
     permissions: # The Dependency Submission API requires write permission
       contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set up JDK
-        uses: actions/setup-java@v2
+        uses: actions/setup-java@v3
         with:
           java-version: '17'
           distribution: 'temurin'
@@ -27,4 +27,4 @@ jobs:
           gradle-build-module: |-
             :service
             :client
-            
+