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DR-3193 Point original AnVIL compact id prefixes to TDR #354

DR-3193 Point original AnVIL compact id prefixes to TDR

DR-3193 Point original AnVIL compact id prefixes to TDR #354

Workflow file for this run

name: Build and Test
on:
push:
branches: [ dev ]
paths-ignore: [ '*.md' ]
pull_request:
branches: [ '**' ]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up JDK 17
uses: actions/setup-java@v2
with:
java-version: '17'
distribution: 'temurin'
- name: Gradle cache
uses: actions/cache@v2
with:
path: |
~/.gradle/caches
~/.gradle/wrapper
key: v1-${{ runner.os }}-gradle-${{ github.ref }}-${{ github.sha }}
restore-keys: v1-${{ runner.os }}-gradle-${{ github.ref }}
- name: Cache SonarCloud packages
uses: actions/cache@v1
with:
path: ~/.sonar/cache
key: ${{ runner.os }}-sonar
restore-keys: ${{ runner.os }}-sonar
- name: Gradle build service
run: ./gradlew --build-cache :service:build -x test
- name: SonarQube scan service
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
run: ./gradlew --build-cache :service:sonarqube
- name: Upload spotbugs results
uses: github/codeql-action/upload-sarif@main
with:
sarif_file: service/build/reports/spotbugs/main.sarif
jib:
needs: [ build ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up JDK 17
uses: actions/setup-java@v2
with:
java-version: '17'
distribution: 'temurin'
- name: Gradle cache
uses: actions/cache@v2
with:
path: |
~/.gradle/caches
~/.gradle/wrapper
key: v1-${{ runner.os }}-gradle-${{ github.ref }}-${{ github.sha }}
- name: Add Google Cloud Profiler to Docker Image
run: docker build ./service -t drshub:local
- name: Build image locally with jib
# build the docker image to make sure it does not error
run: |
./gradlew --build-cache :service:jibDockerBuild \
-Djib.from.image=docker://drshub:local \
-Djib.console=plain
unit-tests:
needs: [ build ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up JDK 17
uses: actions/setup-java@v2
with:
java-version: '17'
distribution: 'temurin'
- name: Git secrets setup
run: |
git clone https://github.com/awslabs/git-secrets.git ~/git-secrets
cd ~/git-secrets
git checkout b9e96b3212fa06aea65964ff0d5cda84ce935f38
sudo make install
- name: Secrets check
run: |
sudo ln -s "$(which echo)" /usr/local/bin/say
./minnie-kenny.sh --force
git secrets --scan-history
- name: Gradle cache
uses: actions/cache@v2
with:
path: |
~/.gradle/caches
~/.gradle/wrapper
key: v1-${{ runner.os }}-gradle-${{ github.ref }}-${{ github.sha }}
- name: Test with coverage
run: ./gradlew --build-cache jacocoTestReport --scan
- name: Codecov
uses: codecov/codecov-action@v3
with:
files: ./service/build/reports/jacoco/test/jacocoTestReport.xml
integration-tests:
needs: [ build ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up JDK 17
uses: actions/setup-java@v2
with:
java-version: '17'
distribution: 'temurin'
- name: Gradle cache
uses: actions/cache@v2
with:
path: |
~/.gradle/caches
~/.gradle/wrapper
key: v1-${{ runner.os }}-gradle-${{ github.ref }}-${{ github.sha }}
- name: Render GitHub Secrets
env:
DEV_FIRECLOUD_ACCOUNT_B64: ${{ secrets.DEV_FIRECLOUD_ACCOUNT_B64 }}
run: echo "$DEV_FIRECLOUD_ACCOUNT_B64" | base64 -d >"./integration/src/main/resources/rendered/user-delegated-sa.json"
- name: Launch the background process for integration tests
run: ./gradlew --build-cache :service:bootRunDev | tee application.log &
- name: Prep the integration project
run: ./gradlew --build-cache :integration:classes
- name: Wait for boot run to be ready
run: |
timeout 60 bash -c 'until echo > /dev/tcp/localhost/8080; do sleep 1; done'
resultStatus=$(echo > /dev/tcp/localhost/8080; echo $?)
if [[ $resultStatus == 0 ]]; then
echo "Server started successfully"
else
echo "Server did not start successfully."
exit 1
fi
- name: Run the integration test suite
run: ./gradlew --build-cache :integration:runTest --args="suites/FullIntegration.json /tmp/foo"
- name: Archive logs
id: archive_logs
if: always()
uses: actions/upload-artifact@v2
with:
name: application-logs
path: |
application.log
notify-slack:
needs: [ build, jib, unit-tests, integration-tests ]
runs-on: ubuntu-latest
if: failure() && github.ref == 'refs/heads/dev'
steps:
- name: Notify slack on failure
uses: 8398a7/action-slack@v3
env:
SLACK_WEBHOOK_URL: ${{ secrets.POLICY_INT_WEBHOOK_URL }}
with:
status: failure
author_name: Build on dev (drs-hub)
fields: workflow,message
text: 'Build failed :sadpanda:'
dispatch-tag:
needs: [ build, jib, unit-tests, integration-tests ]
runs-on: ubuntu-latest
if: success() && github.ref == 'refs/heads/dev'
steps:
- name: Fire off tag action
uses: benc-uk/workflow-dispatch@v1
with:
workflow: Tag
token: ${{ secrets.BROADBOT_TOKEN }}
source-clear:
needs: [ build ]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up JDK
uses: actions/setup-java@v2
with:
java-version: '17'
distribution: 'temurin'
cache: 'gradle'
- name: SourceClear scan
env:
SRCCLR_API_TOKEN: ${{ secrets.SRCCLR_API_TOKEN }}
run: ./gradlew --build-cache srcclr