stabilityHMM

Inference of transcript stability from polyA and 5' splice site sequence elements

Installation:

1. Install RGHMM package from the GitHub as the following scripts.

git clone https://github.com/andrelmartins/QHMM.git

cd QHMM

R CMD INSTALL rqhmm

2. Install twoBit package from the GitHub as the following scripts

git clone https://github.com/andrelmartins/TwoBit.git

cd TwoBit

make

Notice: If you are failed to install TwoBit package, please see the reported issue at: andrelmartins/TwoBit#1

3. Install stabilityHMM package from the GitHub

git clone https://github.com/Danko-Lab/stabilityHMM.git

cd stabilityHMM

make