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alanbergland committed Nov 19, 2024
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5 changes: 2 additions & 3 deletions docs/CHANGE_LOG.md
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---
layout: default
title: Changelog
title: Release Notes
nav_order: 6
permalink: /changelog
---
# Changelog
# Release Notes
---

### 24 August 2024
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* sample metadata fixed: `DESTv2/populationInfo/scripts/update_sampleMetaData_26August2024.R`
* VCF/GDS fixed: `DESTv2/populationInfo/scripts/update_DataFiles_26August2024.sh`
* mapping output renamed: `DESTv2/populationInfo/scripts/update_pipelineOutputNames_24August2024.sh`


### 3 May 2024
* Update the metadata to include standardized baits and country codes
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6 changes: 3 additions & 3 deletions docs/data-files/SNP-tables.md
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Expand Up @@ -23,7 +23,7 @@ You can also download all files including SNP tables using Globus (it is free).

| File Name | Download | Description | MD5 Hash | Size |
|:----------------------------------------|:------------------|:------------------|:--------|
| dest.all.PoolSNP.001.50.3May2024.ann.gds| [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.24Aug2024.ann.gds){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 ! | d963069ffb48736667b33e0ef2d73d1f | 11G |
| dest.all.PoolSNP.001.50.24Aug2024.ann.gds| [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.24Aug2024.ann.gds){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 ! | d963069ffb48736667b33e0ef2d73d1f | 11G |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | 09d4c7d0b7cfaedad4b33c31b6e82ead | 3.5G |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | b823c9df2fa85a043f7f5472c05d994e | 21G |
| dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | e49a4a4f1ae3180a1394727c89d0a4eb | 4G |
Expand All @@ -33,8 +33,8 @@ You can also download all files including SNP tables using Globus (it is free).

| File Name | Download | Description | MD5 Hash | Size |
|:----------------------------------------|:------------------|:------------------|:--------|
| dest.all.PoolSNP.001.50.3May2024.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | ebecc1d45398bcc40b24929a2c29efa9 | 11G |
| dest.all.PoolSNP.001.50.3May2024.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | 30664919120efbe15c70b37eb4a6e4ce |
| dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | ebecc1d45398bcc40b24929a2c29efa9 | 11G |
| dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.24Aug2024.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version 24Aug2024 | 30664919120efbe15c70b37eb4a6e4ce |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | b1d77695b2ad9732e2209699f55cef6e |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | 4eb0353058caa134248696bd271c0c71 |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | eceebf5df4c415999062474b16f8b9d0 |
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8 changes: 6 additions & 2 deletions docs/resources.md
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Expand Up @@ -25,6 +25,10 @@ For more Drosophila genome alignment data: <br>
[Drosophila Genome Nexus](https://www.johnpool.net/genomes.html){:.btn} <br>
<br><br>
<b>Attribution and Usage Policy</b><br>
The data available on dest.bio is open and available for use by the community. We ask that any paper which uses the DEST dataset (in whole or in part) cite [Kapun et al 2021](https://www.biorxiv.org/content/10.1101/2021.02.01.428994v3.abstract).
The data available on dest.bio is open and available for use by the community. <br>
We ask that any paper which uses the DEST v1 dataset (in whole or in part) cite [Kapun et al 2021 Molecular Biology and Evolution](https://academic.oup.com/mbe/article/38/12/5782/6361628). <br>
We ask that any paper which uses the DEST v2 dataset (in whole or in part) cite [Nunez et al 2024 bioRxiv](https://www.biorxiv.org/content/10.1101/2024.11.10.622744v1.abstract). <br>

This website is built and maintained by the [Bergland lab](https://bergland-lab.org).

This website is built and maintained by the [Bergland lab](https://bergland-lab.org). <br>
Please report errors or bugs with this website to Alan Bergland - [email protected]

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