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@alanbergland
alanbergland committed Feb 27, 2024
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47 changes: 27 additions & 20 deletions docs/data-files/SNP-tables.md
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1. TOC
{:toc}
<br>
### bcf Files
<a href="/assets/bcf.txt" download> Click to download a .txt file with a list of all download links</a>

| File Name | Download | Description | MD5 Hash |
|:----------------------------------------|:------------------|:------------------|:-------------|
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | PoolSeq samples using PoolSNP | 07bc5fec3c244ed10b512e51d0a86b4c |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf){: .btn .btn-primary } | PoolSeq samples using SNAPE | 8cc32fbccdb952b68b9d4a941992510b |
| dest.all.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.all.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | All samples using PoolSNP | 2ab95be6888af37d718b8b458f5213b8 |

### gds Files
<a href="/assets/gds.txt" download> Click to download a .txt file with a list of all download links</a>
<a href="/assets/gds.txt" download> Click to download a .txt file with a list of all download links</a></br>

You can also download all files including SNP tables using Globus (it is free). The shared link is <a href="https://app.globus.org/file-manager?origin_id=101f00e8-a4f3-4a48-ba85-1d4174e15772&origin_path=%2F">here</a>. You can learn how to set up a personal Globus account <a href="https://www.rc.virginia.edu/userinfo/globus/">here</a>.

| File Name | Download | MD5 Hash |
| File Name | Download | Description | MD5 Hash |
|:----------------------------------------|:------------------|:------------------|
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | 09d4c7d0b7cfaedad4b33c31b6e82ead |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | b823c9df2fa85a043f7f5472c05d994e |
| dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | e49a4a4f1ae3180a1394727c89d0a4eb |
| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.gds){: .btn .btn-primary } | DEST_V2 - current version | 6a0678bc7bd4da74dd3cb2a34bd1b50f |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | 09d4c7d0b7cfaedad4b33c31b6e82ead |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | b823c9df2fa85a043f7f5472c05d994e |
| dest.all.PoolSNP.001.50.10Nov2020.ann.gds | [Download](http://berglandlab.uvadcos.io/gds/dest.all.PoolSNP.001.50.10Nov2020.ann.gds){: .btn .btn-primary } | DEST_V1 | e49a4a4f1ae3180a1394727c89d0a4eb |

### vcf Files
<a href="/assets/vcf.txt" download> Click to download a .txt file with a list of all download links</a>

| File Name | Download | MD5 Hash |
| File Name | Download | Description | MD5 Hash |
|:----------------------------------------|:------------------|:------------------|
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | b1d77695b2ad9732e2209699f55cef6e |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | 4eb0353058caa134248696bd271c0c71 |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | eceebf5df4c415999062474b16f8b9d0 |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | c3767b15607e20c4058db0d905f5917f |
| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | 3c85da22c0075ec34e994c0f2a27d754 |
| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | e83543ee42bdc8b2bb107d68c223538b |
| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz){: .btn .btn-primary } | DEST_V2 - current version | 03f2afbff7f7043052da1249ecad53b8 |
| dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.8Jun2023.norep.AT_EScorrect.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V2 - current version | d532f8e0e6a182355cdcfb238534d611 |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | b1d77695b2ad9732e2209699f55cef6e |
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | 4eb0353058caa134248696bd271c0c71 |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | eceebf5df4c415999062474b16f8b9d0 |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | c3767b15607e20c4058db0d905f5917f |
| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz){: .btn .btn-primary } | DEST_V1 | 3c85da22c0075ec34e994c0f2a27d754 |
| dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi | [Download](http://berglandlab.uvadcos.io/vcf/dest.all.PoolSNP.001.50.10Nov2020.ann.vcf.gz.tbi){: .btn .btn-primary } | DEST_V1 | e83543ee42bdc8b2bb107d68c223538b |


### bcf Files
<a href="/assets/bcf.txt" download> Click to download a .txt file with a list of all download links</a>

| File Name | Download | Description | MD5 Hash |
|:----------------------------------------|:------------------|:------------------|:-------------|
| dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: PoolSeq samples using PoolSNP | 07bc5fec3c244ed10b512e51d0a86b4c |
| dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.PoolSeq.SNAPE.NA.NA.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: PoolSeq samples using SNAPE | 8cc32fbccdb952b68b9d4a941992510b |
| dest.all.PoolSNP.001.50.10Nov2020.header.bcf | [Download](http://berglandlab.uvadcos.io/bcf/dest.all.PoolSNP.001.50.10Nov2020.header.bcf){: .btn .btn-primary } | DEST_V1: All samples using PoolSNP | 2ab95be6888af37d718b8b458f5213b8 |

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