setup: bump dcnum from 0.25.0 to 0.25.1 (minor speed-up)

DC-analysis · Sep 10, 2024 · 9b187b2 · 9b187b2
1 parent 1c7a57b
commit 9b187b2
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Showing 4 changed files with 7 additions and 2 deletions.
diff --git a/CHANGELOG b/CHANGELOG
@@ -1,5 +1,7 @@
 0.6.2
  - docs: fix typo in CLI help page
+ - setup: bump dcnum from 0.25.0 to 0.25.1 (minor speed-up)
+ - setup: support numpy 2
 0.6.1
  - enh: automatically detect flickering and apply offset correction
  - setup: bump dcnum from 0.24.0 to 0.25.0 (flickering detection)

diff --git a/pyproject.toml b/pyproject.toml
@@ -27,9 +27,9 @@ classifiers = [
 ]
 license = {text = "GPL version 3.0 or later"}
 dependencies = [
-    "dcnum>=0.25.0",
+    "dcnum>=0.25.1",
     "h5py>=3.0.0, <4",
-    "numpy>=1.21, <2",  # CVE-2021-33430
+    "numpy>=1.21, <3",  # CVE-2021-33430
 ]
 dynamic = ["version"]
 

diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -199,6 +199,7 @@ def test_cli_set_background(cli_runner, method, kwarg, ppid):
 
 
 def test_cli_torchmpo(cli_runner):
+    pytest.importorskip("torch")
     mpath = retrieve_model("segm-torch-model_unet-dcnum-test_g1_910c2.zip")
     path_temp = retrieve_data(
         "fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip")
@@ -228,6 +229,7 @@ def test_cli_torchmpo(cli_runner):
 
 
 def test_cli_torchmpo_wrong_model(cli_runner):
+    pytest.importorskip("torch")
     mpath = retrieve_model("segm-torch-model_unet-dcnum-test_g1_910c2.zip")
     path_temp = retrieve_data(
         "fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip")

diff --git a/tests/test_gui.py b/tests/test_gui.py
@@ -154,6 +154,7 @@ def test_gui_segm_torch_model(mw, qtbot, monkeypatch):
 
 
 def test_gui_segm_torch_model_with_wrong_model(mw, qtbot, monkeypatch):
+    pytest.importorskip("torch")
     # Create a test dataset with metadata that will make the model invalid
     path = retrieve_data(
         "fmt-hdf5_cytoshot_full-features_legacy_allev_2023.zip")