MedMentionsReader

About

This module parses the MedMentions dataset.

Usage

Preparing the Dataset

The dataset needs to be unzipped after cloning.

git clone https://github.com/chanzuckerberg/MedMentions.git
gunzip MedMentions/full/data/corpus_pubtator.txt.gz

API Examples

from medmentionsreader.MedMentionsReader import MedMentionsReader
mmr = MedMentionsReader('../MedMentions/full/data')
mmr.get_train()
mmr.get_test()
mmr.get_dev()
mmr.get_all()