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SarahDowsland authored Nov 13, 2023
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description: Learn data management and analytical skills for genomic research
---

Genomics teaches data management and analysis for genomics research including:
(1) best practices for organization of bioinformatics projects and data,
(2) use of command-line utilities to connect to and use cloud computing and storage resources,
(3) use of command-line tools for data preparation,
(4) use of command-line tools to analyze sequence quality and perform and automate variant calling.

## Target audience
- Learners who have completed the Prenomics Course
- PhD Students & Researchers
- This course would be appropriate for learners with experience using the command line, who are expecting to generate a dataset in the future or those who already have a dataset and would like guidance on how to analyse it.

## Registration
This course is free of charge, however we ask that you register for the Self-Study learning mode using the registration button below, so we have your details and we can provide you with additional information.
There are 30 places available for this online workshop, please register using the online form. This course is free of charge.

## Pre-requisites
Knowledge: learners should have completed the Prenomics course or be able to successfully complete the self-assessment quiz. Learners are also expected to have some familiarity with biological concepts, including the concept of genomic variation within a population. Please note, you will need to complete the Creating your own instance course beforehand.
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|------------------|------------------|------------------------------------|
| Monday 15 January 2024 | 10:00 - 13:00 | Session 1 - Project management for cloud genomics |
| Wednesday 17 January 2024 | 10:00 - 13:00 | Session 2 - Data preparation and organisation |
| Monday 15 January 2024 | 10:00 - 13:00 | Session 3 - Assessing read quality; trimming and filtering reads |
| Monday 23 January 2024 | 10:00 - 13:00 | Session 3 - Assessing read quality; trimming and filtering reads |
| Wednesday 25 January 2024 | 11:00 - 14:00 | Session 4 - Finding sequence variants |

## Target audience
- Learners who have completed the Prenomics Course
- PhD Students & Researchers
- This course would be appropriate for learners with experience using the command line, who are expecting to generate a dataset in the future or those who already have a dataset and would like guidance on how to analyse it.


## Learning outcomes
Following completion of this course, learners will be able to

- structure their data and metadata and plan for an NGS project
- organise and document genomics data and bioinformatics workflows
- understand what information is needed by a sequencing facility
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