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<meta name="author" content="Sarah Dowsland">
<meta name="dcterms.date" content="2023-11-15">

<title>Cloud-SPAN - New Prenomics Workshop</title>
<title>Cloud-SPAN - Prenomics and Genomics</title>
<style>
code{white-space: pre-wrap;}
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<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">New Prenomics Workshop</h1>
<h1 class="title">Prenomics and Genomics</h1>
<div class="quarto-categories">
<div class="quarto-category">Prenomics</div>
<div class="quarto-category">Open science</div>
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</header>

<p>For most of our new learners, the idea of doing things like using the command line and accessing the cloud is completely new and a bit overwhelming. But these are skills which, once learned, can totally transform how you do your analysis. That’s why Cloud-SPAN offers a core ‘Prenomics’ course to help you gain confidence in these key skills and prepare you for the Genomics course.</p>
<p>Join us for our next online workshop which will take place on the 6-7 December 2023.</p>
<p>Join us for our next set of online workshops which will take place on:</p>
<div class="callout callout-style-default callout-note callout-titled">
<div class="callout-header d-flex align-content-center">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Register using the <a href="https://forms.gle/MnuYycBuBfkpX7R18">online form</a>
Register for Prenomics 6-7 December 2023 using the <a href="https://forms.gle/MnuYycBuBfkpX7R18">online form</a>
</div>
</div>
<div class="callout-body-container callout-body">

</div>
<section id="register-for-genomics-15-25-january-2023-using-the-online-form" class="level1 callout-body-container callout-body">
<h1>Register for Genomics 15-25 January 2023 using the <a href="https://forms.gle/Jwf4Hg1Kk6UKwbRo9">online form</a></h1>
</section>
</div>
<section id="how-prenomics-was-born" class="level2">
<h2 class="anchored" data-anchor-id="how-prenomics-was-born"><strong>How Prenomics was born</strong></h2>
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"text": "New Prenomics Workshop\n\n\n\nPrenomics\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-11-15\n\n\n\n\n\n\n\n\n\n\n\n\nNew Prenomics Workshop\n\n\n\nPrenomics\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-11-15\n\n\n\n\n\n\n\n\n\n\n\n\nOnline Core R Workshop\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-05-11\n\n\n\n\n\n\n\n\n\n\n\n\n🗓️ Save the date 20th June! 🗓️ NEW online workshop - Introduction to R\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-05-09\n\n\n\n\n\n\n\n\n\n\n\n\nCongratulations to James Chong and the team!\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-26\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-19\n\n\n\n\n\n\n\n\n\n\n\n\nNorthernBUG Meeting\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-19\n\n\n\n\n\n\n\n\n\n\n\n\nIn depth: course feedback\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2023-02-02\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-12-16\n\n\n\n\n\n\n\n\n\n\n\n\n💸Scholarships to attend the Northern Bioinformatics User Group meeting 13th Jan\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-12-16\n\n\n\n\n\n\n\n\n\n\n\n\nHow do we support our learners?\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-11-07\n\n\n\n\n\n\n\n\n\n\n\n\nPrenomics: Lowering barriers to participation\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-10-18\n\n\n\n\n\n\n\n\n\n\n\n\nScholarships, funding and so much more!\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-10-11\n\n\n\n\n\n\n\n\n\n\n\n\n📢 Online workshop on FAIR data hosted by the UK Reproducibility Network\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-10-11\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN awarded NERC funding to expand training courses\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-09-05\n\n\n\n\n\n\n\n\n\n\n\n\nOur Solutions to Challenges in Environmental ’Omics\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-08-31\n\n\n\n\n\n\n\n\n\n\n\n\n💸Scholarships to attend the Northern Bioinformatics User Group meeting 9th September\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEmma Rand\n\n\n2022-07-18\n\n\n\n\n\n\n\n\n\n\n\n\nChallenges in Environmental ’Omics\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-07-13\n\n\n\n\n\n\n\n\n\n\n\n\nMaking the Prenomics summary poster\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-07-06\n\n\n\n\n\n\n\n\n\n\n\n\nFAIR at Cloud-SPAN\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-06-29\n\n\n\n\n\n\n\n\n\n\n\n\nBioinformatics Meeting on ‘Career pathways into bioinformatics’\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-06-22\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN April Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-06-14\n\n\n\n\n\n\n\n\n\n\n\n\nMore online computational training for life scientists!\n\n\n\nGenomics\n\n\nBehind-the-scenes\n\n\n\n\n\n\n\nEmma Rand\n\n\n2022-06-08\n\n\n\n\n\n\n\n\n\n\n\n\nWhat is FAIR data?\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-05-31\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nGenomics Self-Study now LIVE! 🧬\n\n\n\nGenomics\n\n\nAnnouncements\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-05-22\n\n\n\n\n\n\n\n\n\n\n\n\nCourse Update\n\n\n\nGenomics\n\n\nBehind-the-scenes\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2021-12-14\n\n\n\n\n\n\n\n\nNo matching items"
"text": "Prenomics and Genomics\n\n\n\nPrenomics\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-11-15\n\n\n\n\n\n\n\n\n\n\n\n\nNew Prenomics Workshop\n\n\n\nPrenomics\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-11-15\n\n\n\n\n\n\n\n\n\n\n\n\nOnline Core R Workshop\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-05-11\n\n\n\n\n\n\n\n\n\n\n\n\n🗓️ Save the date 20th June! 🗓️ NEW online workshop - Introduction to R\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-05-09\n\n\n\n\n\n\n\n\n\n\n\n\nCongratulations to James Chong and the team!\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-26\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-19\n\n\n\n\n\n\n\n\n\n\n\n\nNorthernBUG Meeting\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2023-04-19\n\n\n\n\n\n\n\n\n\n\n\n\nIn depth: course feedback\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2023-02-02\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-12-16\n\n\n\n\n\n\n\n\n\n\n\n\n💸Scholarships to attend the Northern Bioinformatics User Group meeting 13th Jan\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-12-16\n\n\n\n\n\n\n\n\n\n\n\n\nHow do we support our learners?\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-11-07\n\n\n\n\n\n\n\n\n\n\n\n\nPrenomics: Lowering barriers to participation\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-10-18\n\n\n\n\n\n\n\n\n\n\n\n\nScholarships, funding and so much more!\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-10-11\n\n\n\n\n\n\n\n\n\n\n\n\n📢 Online workshop on FAIR data hosted by the UK Reproducibility Network\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-10-11\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN awarded NERC funding to expand training courses\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-09-05\n\n\n\n\n\n\n\n\n\n\n\n\nOur Solutions to Challenges in Environmental ’Omics\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-08-31\n\n\n\n\n\n\n\n\n\n\n\n\n💸Scholarships to attend the Northern Bioinformatics User Group meeting 9th September\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEmma Rand\n\n\n2022-07-18\n\n\n\n\n\n\n\n\n\n\n\n\nChallenges in Environmental ’Omics\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-07-13\n\n\n\n\n\n\n\n\n\n\n\n\nMaking the Prenomics summary poster\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-07-06\n\n\n\n\n\n\n\n\n\n\n\n\nFAIR at Cloud-SPAN\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-06-29\n\n\n\n\n\n\n\n\n\n\n\n\nBioinformatics Meeting on ‘Career pathways into bioinformatics’\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nSarah Dowsland\n\n\n2022-06-22\n\n\n\n\n\n\n\n\n\n\n\n\nCloud-SPAN April Code Retreat\n\n\n\nAnnouncements\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-06-14\n\n\n\n\n\n\n\n\n\n\n\n\nMore online computational training for life scientists!\n\n\n\nGenomics\n\n\nBehind-the-scenes\n\n\n\n\n\n\n\nEmma Rand\n\n\n2022-06-08\n\n\n\n\n\n\n\n\n\n\n\n\nWhat is FAIR data?\n\n\n\nOpen science\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-05-31\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nGenomics Self-Study now LIVE! 🧬\n\n\n\nGenomics\n\n\nAnnouncements\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2022-05-22\n\n\n\n\n\n\n\n\n\n\n\n\nCourse Update\n\n\n\nGenomics\n\n\nBehind-the-scenes\n\n\n\n\n\n\n\nEvelyn Greeves\n\n\n2021-12-14\n\n\n\n\n\n\n\n\nNo matching items"
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"text": "For most of our new learners, the idea of doing things like using the command line and accessing the cloud is completely new and a bit overwhelming. But these are skills which, once learned, can totally transform how you do your analysis. That’s why Cloud-SPAN offers a core ‘Prenomics’ course to help you gain confidence in these key skills and prepare you for the Genomics course.\nJoin us for our next online workshop which will take place on the 6-7 December 2023."
"text": "For most of our new learners, the idea of doing things like using the command line and accessing the cloud is completely new and a bit overwhelming. But these are skills which, once learned, can totally transform how you do your analysis. That’s why Cloud-SPAN offers a core ‘Prenomics’ course to help you gain confidence in these key skills and prepare you for the Genomics course.\nJoin us for our next set of online workshops which will take place on:"
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"text": "How Prenomics was born\nWhen we ran our first Genomics course in autumn 2021, we discovered that a major sticking point for many participants was directory structure and navigation. This was making it really difficult to help people log into the cloud, where we could then teach them core command line skills. We spent much more time troubleshooting and going over these basic skills than we’d expected, meaning we had to rush through more complex content later on about analysis tools and pipelines. \nOverall, this meant our learners began their command line journey from a place of frustration (which has a huge impact on confidence) and we were forced to minimise the amount of time spent on the ‘genomics’ part of the Genomics course.\nAs a result, we split the original Genomics curriculum across two courses: Prenomics and Genomics. In Prenomics, all the focus is on the command line. We teach about files and directory structure, and spend lots of time guiding learners through creating a folder and navigating to it without using the command line. We also teach those crucial core skills - commonly used commands like ls, cd and mv. Later, as learners gain confidence, we move on to more complex commands like grep and redirection with &gt; and &gt;&gt;."
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"text": "Why is Prenomics important?\nSeparating the curriculum into two courses has several benefits. Most importantly, it gives us lots more time to dedicate to core skills and troubleshooting. It also gives us more time to spend on Genomics, as learners start that course already confident about their command line abilities. Plus, those already familiar with the command line can skip Prenomics and go straight to Genomics.\nAnd it works! We know this because we collect evaluation feedback from participants both before and after the course, asking them to evaluate their understanding of various topics. After we ran the newly designed Prenomics/Genomics combo course in Spring 2022, we compared the understanding scores of learners across three general themes of Command Line, Genomics and Project Organisation (a higher number means a higher level of understanding, with no understanding being 1 and most confident understanding being 6).\n\n\n\n."
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