Add publish.yml file for CI

Cloud-SPAN · Sep 20, 2023 · 4d6dc24 · 4d6dc24
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diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -0,0 +1,25 @@
+on:
+  workflow_dispatch:
+  push:
+    branches: main
+
+name: Quarto Publish
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+
+      - name: Render and Publish
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: {{< meta provider >}}
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/docs/blogs.html b/docs/blogs.html
@@ -177,7 +177,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
 
 <div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-categories="Open science" data-listing-date-sort="1653951600000" data-listing-file-modified-sort="1694618208329" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
+<div class="g-col-1" data-index="0" data-categories="Open science" data-listing-date-sort="1653951600000" data-listing-file-modified-sort="1695206777037" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4">
 <a href="./blogs/05-31-22/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="blogs\05-31-22\FAIR acronym graphic with attr.png" alt="A graphic showing the 4 FAIR Principles: Findable (illustrated with a magnifying glass), Accessible (illustrated with an open lock), Interoperable (illustrated with interlocking gears) and Reusable (illustrated with a green recycling symbol)" style="height: 150px;"  class="thumbnail-image card-img"/></p>
@@ -205,7 +205,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-categories="Genomics,Announcements" data-listing-date-sort="1653174000000" data-listing-file-modified-sort="1694618208324" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
+<div class="g-col-1" data-index="1" data-categories="Genomics,Announcements" data-listing-date-sort="1653174000000" data-listing-file-modified-sort="1695206777033" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2">
 <a href="./blogs/05-22-22/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -238,7 +238,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="2" data-categories="Genomics,Behind-the-scenes" data-listing-date-sort="1639440000000" data-listing-file-modified-sort="1694618208331" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5">
+<div class="g-col-1" data-index="2" data-categories="Genomics,Behind-the-scenes" data-listing-date-sort="1639440000000" data-listing-file-modified-sort="1695206777037" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5">
 <a href="./blogs/12-14-21/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="blogs\12-14-21\dumbbell plot g_11_21.png" alt="A dumbbell plot with each topic covered in the course on its own line. The graph indicates the rating given before the course was taken and the score after, with a line joining the two. For all topics the score increases, usually by two or so points." style="height: 150px;"  class="thumbnail-image card-img"/></p>
@@ -269,7 +269,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="3" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618208332" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="3" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777037" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./blogs/blog post 4/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -289,7 +289,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="4" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618208333" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="4" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777037" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./blogs/blog post 5/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>

diff --git a/docs/self_study_courses.html b/docs/self_study_courses.html
@@ -175,7 +175,7 @@ <h1 class="title">Self-study Courses</h1>
 
 <div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618209373" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="0" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777121" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./self_study/Create Your Own AWS Instance/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -198,7 +198,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618209384" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="1" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777122" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./self_study/Genomics/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -221,7 +221,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="2" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618209404" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="2" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777122" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./self_study/Metagenomics for Microbiologists/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -244,7 +244,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="3" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1694618209426" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="3" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777123" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./self_study/Prenomics/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>

diff --git a/docs/site_libs/bootstrap/bootstrap.min.css b/docs/site_libs/bootstrap/bootstrap.min.css
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
@@ -2,70 +2,70 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/about.html</loc>
-    <lastmod>2023-09-20T09:51:33.021Z</lastmod>
+    <lastmod>2023-09-20T10:53:28.334Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs/05-22-22/index.html</loc>
-    <lastmod>2023-09-20T09:51:34.959Z</lastmod>
+    <lastmod>2023-09-20T10:53:29.520Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs/05-31-22/index.html</loc>
-    <lastmod>2023-09-20T09:51:36.771Z</lastmod>
+    <lastmod>2023-09-20T10:53:30.672Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs/12-14-21/index.html</loc>
-    <lastmod>2023-09-20T09:51:38.624Z</lastmod>
+    <lastmod>2023-09-20T10:53:31.775Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs/blog post 4/index.html</loc>
-    <lastmod>2023-09-20T09:51:40.239Z</lastmod>
+    <lastmod>2023-09-20T10:53:32.725Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs/blog post 5/index.html</loc>
-    <lastmod>2023-09-20T09:51:41.801Z</lastmod>
+    <lastmod>2023-09-20T10:53:33.682Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/blogs.html</loc>
-    <lastmod>2023-09-20T09:51:44.281Z</lastmod>
+    <lastmod>2023-09-20T10:53:35.199Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/index.html</loc>
-    <lastmod>2023-09-20T09:51:46.029Z</lastmod>
+    <lastmod>2023-09-20T10:53:36.202Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/self_study/Create Your Own AWS Instance/index.html</loc>
-    <lastmod>2023-09-20T09:51:47.691Z</lastmod>
+    <lastmod>2023-09-20T10:53:37.150Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/self_study/Genomics/index.html</loc>
-    <lastmod>2023-09-20T09:51:49.185Z</lastmod>
+    <lastmod>2023-09-20T10:53:38.019Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/self_study/Metagenomics for Microbiologists/index.html</loc>
-    <lastmod>2023-09-20T09:51:50.720Z</lastmod>
+    <lastmod>2023-09-20T10:53:38.970Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/self_study/Prenomics/index.html</loc>
-    <lastmod>2023-09-20T09:51:52.300Z</lastmod>
+    <lastmod>2023-09-20T10:53:39.906Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/self_study_courses.html</loc>
-    <lastmod>2023-09-20T09:52:28.203Z</lastmod>
+    <lastmod>2023-09-20T10:53:41.093Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Code Retreat/index.html</loc>
-    <lastmod>2023-09-20T09:51:55.924Z</lastmod>
+    <lastmod>2023-09-20T10:53:42.456Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/upcoming/Core R/index.html</loc>
-    <lastmod>2023-09-20T09:51:57.369Z</lastmod>
+    <lastmod>2023-09-20T10:53:43.744Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/upcoming/NERC Metagenomics/index.html</loc>
-    <lastmod>2023-09-20T09:51:59.234Z</lastmod>
+    <lastmod>2023-09-20T10:53:45.120Z</lastmod>
   </url>
   <url>
     <loc>https://cloud-span.github.io/cloud-span-quarto-site/upcoming_courses.html</loc>
-    <lastmod>2023-09-20T09:52:30.929Z</lastmod>
+    <lastmod>2023-09-20T10:53:46.472Z</lastmod>
   </url>
 </urlset>
diff --git a/docs/upcoming_courses.html b/docs/upcoming_courses.html
@@ -175,7 +175,7 @@ <h1 class="title">Upcoming Courses</h1>
 
 <div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-listing-date-sort="1701993600000" data-listing-file-modified-sort="1695134954081" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="0" data-listing-date-sort="1701993600000" data-listing-file-modified-sort="1695206777125" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./upcoming/Code Retreat/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -198,7 +198,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-listing-date-sort="1699228800000" data-listing-file-modified-sort="1695203486034" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="9">
+<div class="g-col-1" data-index="1" data-listing-date-sort="1699228800000" data-listing-file-modified-sort="1695206777127" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="9">
 <a href="./upcoming/NERC Metagenomics/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>
@@ -221,7 +221,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="2" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695117272841" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
+<div class="g-col-1" data-index="2" data-listing-date-sort="1577836800000" data-listing-file-modified-sort="1695206777126" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
 <a href="./upcoming/Core R/index.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="listing-item-img-placeholder card-img-top" style="height: 150px;">&nbsp;</div>