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24 Open 28 Closed
24 Open 28 Closed
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Issues list

-t/--threads cmd line parsing error
#56 opened Jul 31, 2022 by cmatKhan
@RG headers not being passed on to BAM
#55 opened Oct 9, 2021 by santiagosnchez
Error: program build failure (-11) occurs when running NextGenMap with Docker
#54 opened Nov 4, 2020 by penguinmeow
2
Tag handling with --keep-tags creates invalid SAM output
#53 opened Sep 15, 2020 by adamjorr
1
NGM: Header does not match the data
#50 opened Oct 8, 2019 by jhcaddisfly
10
paired-end mapping FF orientation
#49 opened Sep 18, 2019 by amitblum
Add --version switch
#45 opened Oct 29, 2018 by tseemann
-h should return 0, not 1
#44 opened Oct 29, 2018 by tseemann
The docker container does not specify which version of ubuntu is used
#40 opened May 23, 2018 by eburgueno
Provide an entrypoint in the docker container
#39 opened May 23, 2018 by eburgueno
Incorrect permissions after install
#38 opened May 23, 2018 by eburgueno
3
Error: NVIDIA Platform not found
#37 opened May 22, 2018 by ghost
Error: Tried to insert kmer 9318400 starting at position 143779831, number of slots 65. Position: 65
#36 opened May 15, 2018 by fgp
OPENCL Couldn't create sub-devices. Error
#34 opened Mar 21, 2018 by maolun
4
OPENCL error: couldn't get number of OpenCl devices. Device not found
#32 opened Mar 8, 2018 by thesnakeguy
1
Nvidia platform not found, under windows10 Bash.
#31 opened Feb 23, 2018 by ontheway16
Compiling NextGenMap from source throws error about not finding opencl on a non-gpu system
#30 opened Dec 13, 2017 by samfux84
1
unrecognized option -h/--help
#29 opened Nov 29, 2017 by SethosII
Read discarded
#26 opened Aug 15, 2017 by asdcid
Support / checking for long lines in reference fasta
#19 opened Mar 3, 2017 by roblanf v0.5.4
1
RNA-seq support enhancement
#18 opened Jan 27, 2017 by bqminh
MultiQC module for NGM enhancement
#17 opened Jan 27, 2017 by bqminh
BAM validation problems (also re: Picard)
#4 opened Jun 26, 2014 by brantfaircloth
1
Header Problem with Picard
#3 opened Mar 10, 2014 by ThomasWolf71
3
ProTip! no:milestone will show everything without a milestone.