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Minor fixes #8

Merged
merged 7 commits into from
Feb 21, 2024
Merged

Minor fixes #8

merged 7 commits into from
Feb 21, 2024

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sfluegel05
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@sfluegel05 sfluegel05 commented Feb 13, 2024

Various minor fixes, including:

  • creation of train/val split not filters for ids not present in test set instead of smiles not present in test set (data set should now be 2,000-3,000 entities larger)
    • (this was the cause of some classes not having 50 members across train/val/test sets)
  • ChebiOverXPartial now also includes top_class into dataset instead of just subclasses
  • requirements has been updated
  • loss is now a package
  • weighting for chebi50_v227 added
  • model_kwargs are passed to model in evaluate_model()
  • changed black version to 24.2.0 (same as used by lint)

@sfluegel05 sfluegel05 marked this pull request as ready for review February 13, 2024 16:03
@sfluegel05 sfluegel05 merged commit 9e5a827 into dev Feb 21, 2024
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@sfluegel05 sfluegel05 deleted the features-sfluegel branch February 21, 2024 10:39
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