Due to changes in output SAM (not exactly the same as the one from ht…

…seq-count, I updated the diff file to check correspondence in feature, not full line

diff.py

@@ -7,7 +7,8 @@
 
 with open(file1, 'r') as f1, open(file2, 'r') as f2:
     for line1, line2 in zip(f1, f2):
-        if line1 != line2:
-            spline1 = line1.split('\t')
+        spline1 = line1.split('\t')
+        spline2 = line2.split('\t')
+        if spline1[-1] != spline2[-1]:
             # split the lines on tab, print the first, fourth, sixth and last fields side by side for each file
             print('\t'.join([spline1[0], spline1[2], spline1[3], spline1[5], spline1[-1].strip()]), '\t', line2.split('\t')[-1].strip())