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CaoTianze committed May 5, 2023
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<h1 id="color-schemes">color schemes</h1>
<p>Default color schemes: chemistry, chemistry2, hydrophobicity, nucleotide, nucleotide2, base_pairing, clustalx, taylor.</p>
<h2 id="function-make_col_schemename-str-custom-scheme-chars-optionalliststr-none-groups-optionallistint-none-cols-optionallistint-none-values-optionallistint-none-dict"><em>function</em> make_col_scheme(name: str = 'Custom Scheme', chars: Optional[list[str]] = None, groups: Optional[list[int]] = None, cols: Optional[list[int]] = None, values: Optional[list[int]] = None) -&gt; dict</h2>
<pre><code class="language-python">from plotnineseqsuite.col_schemes import make_col_scheme
cs1 = make_col_scheme(chars=['A', 'T', 'C', 'G'], groups=['gr1', 'gr1', 'gr2', 'gr2'],cols=['purple', 'purple', 'blue', 'blue'])
cs2 = make_col_scheme(chars=['A', 'T', 'C', 'G'], values=[1,2,3,4])
</code></pre>
<p>The function is used to create custom color style themes.</p>
<h3 id="name">name</h3>
<p>Name of custom scheme. It will display in legend.</p>
<h3 id="chars">chars</h3>
<p>Letters will used to plot.</p>
<h3 id="groups">groups</h3>
<p>Used in a custom discrete color scheme. It groups letters.</p>
<h3 id="cols">cols</h3>
<p>Used in a custom discrete color scheme. It represents the RGB value of the grouped color.</p>
<h3 id="values">values</h3>
<p>Used in a custom continuous color scheme. It represents the numeric value of the corresponding letter.</p>
<h2 id="function-get_col_schemecol_scheme-str-seq_type-str-auto-dict"><em>function</em> get_col_scheme(col_scheme: str, seq_type: str = 'AUTO') -&gt; dict</h2>
<p>This function is used to get the built-in color theme of the type of the given sequence.</p>
<pre><code class="language-python">from plotnineseqsuite.col_schemes import get_col_scheme
col_df = get_col_scheme(col_scheme='chemistry')
</code></pre>
<h3 id="col_scheme">col_scheme</h3>
<p>One of the default color schemes.</p>
<h3 id="seq_type">seq_type</h3>
<p>AA or DNA or RNA</p>

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