Updated Readme, Installation guide and some fixes.

CSOgroup · Aug 23, 2024 · d53e905 · d53e905
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diff --git a/README.Rmd b/README.Rmd
@@ -19,7 +19,7 @@ knitr::opts_chunk$set(
 
 The goal of SelectSim package is to implement the methodology to infer inter-dependencies between functional alterations in cancer. SelectSim estimates the expected number of mutations in a given gene and a given sample from the mutation frequency of the gene, f(g), and the tumor mutation burden (TMB) of the sample, $\mu$(t). These values can be estimated within specific mutation and tumor subsets, to account for heterogeneous tumor types, tissue specificities, and distinct mutational processes
 
-![SelectSim Method](SelectSim_method.png)
+![SelectSim Method](https://github.com/CSOgroup/SelectSim/blob/main/SelectSim_method.png)
 
 ## Installation
 

diff --git a/README.md b/README.md
@@ -16,7 +16,9 @@ heterogeneous tumor types, tissue specificities, and distinct mutational
 processes
 
 <figure>
-<img src="SelectSim_method.png" alt="SelectSim Method" />
+<img
+src="https://github.com/CSOgroup/SelectSim/blob/main/SelectSim_method.png"
+alt="SelectSim Method" />
 <figcaption aria-hidden="true">SelectSim Method</figcaption>
 </figure>
 

diff --git a/docs/articles/data_processing.html b/docs/articles/data_processing.html
diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -4,7 +4,7 @@ pkgdown_sha: ~
 articles:
   data_processing: data_processing.html
   introduction: introduction.html
-last_built: 2024-08-23T11:08Z
+last_built: 2024-08-23T11:19Z
 urls:
   reference: https://csogroup.github.io/SelectSim/reference
   article: https://csogroup.github.io/SelectSim/articles

diff --git a/docs/search.json b/docs/search.json