custom photon fields / SOPHIA update

.gitignore

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+.*
+!.travis.yml
+
+*~
+
+doc/*
+build/*
+data/*
+data-tools/*
+data.tar.gz
+CMakeCache.txt
+
+CMakeFiles/
+bin/
+install/
+lib/
+share/
+
+cmake/CMakeCache.txt
+cmake/CMakeFiles/
+
+*.png
+*.pyc

.mailmap

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+# Use git shortlog -sne to verify that all mails are mapped correctly
+David Walz <[email protected]>
+Gero Müller <[email protected]>
+Gero Müller <[email protected]> <[email protected]>
+Tobias Winchen <[email protected]> <[email protected]>
+Tobias Winchen <[email protected]> Tobias Winchen <devnull@localhost>
+Tobias Winchen <[email protected]> <[email protected]>
+Andrej Dundović <[email protected]>
+Andrej Dundović <[email protected]> <[email protected]>
+Andrej Dundović <[email protected]> <[email protected]>
+Andrej Dundović <[email protected]> <[email protected]>
+Andrej Dundović <[email protected]> <[email protected]>
+Lukas Merten <[email protected]>
+Christopher Heiter <[email protected]> <[email protected]>
+Rafael Alves Batista <[email protected]>
+Rafael Alves Batista <[email protected]> <[email protected]>
+Rafael Alves Batista <[email protected]> <[email protected]>
+Rafael Alves Batista <[email protected]> <[email protected]>
+Daniel Kuempel <[email protected]>
+Daniel Kuempel <[email protected]> <[email protected]>
+Daniel Kuempel <[email protected]> <[email protected]>
+Arjen van Vliet <[email protected]>
+Arjen van Vliet <[email protected]> <[email protected]>
+Arjen van Vliet <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Carmelo Evoli <[email protected]> <[email protected]>
+Marcus Wirtz <[email protected]>
+Bjoern Eichmann <[email protected]>
+Martin Urban <[email protected]>

.travis.yml

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+language: cpp
+addons:
+    apt:
+      packages:
+        - swig
+        - gfortran
+        - libfftw3-dev
+        - libcfitsio3-dev
+        - libmuparser-dev
+        - python-dev
+        - python-numpy
+        - python-setuptools
+        - python3-setuptools
+        - python3-dev
+        - cmake
+        - libhdf5-serial-dev
+        - python-matplotlib
+        - python3-matplotlib
+        - python-scipy
+        - python3-scipy
+        - libiomp5
+        - libiomp-dev
+        - doxygen
+        - graphviz
+cache:
+  directories:
+    - $HOME/crpropa_cache
+matrix:
+  include:
+    - os : linux
+      dist: trusty
+      compiler: gcc
+      env:
+        - PYTHON_EXECUTABLE=/usr/bin/python3
+        - BUILD_DOC=true
+    - os : linux
+      dist: trusty
+      compiler: clang
+      env:
+        - PYTHON_EXECUTABLE=/usr/bin/python2
+        - LD_LIBRARY_PATH=/usr/local/clang/lib:$LD_LIBRARY_PATH
+    - os : linux
+      dist: trusty
+      compiler: gcc
+      env: PYTHON_EXECUTABLE=/usr/bin/python2
+    - os : linux
+      dist: trusty
+      compiler: clang
+      env:
+        - PYTHON_EXECUTABLE=/usr/bin/python2
+        - LD_LIBRARY_PATH=/usr/local/clang/lib:$LD_LIBRARY_PATH
+    - os : osx
+      compiler: clang
+      env:
+        - CXX_COMPILER='clang++'
+        - C_COMPILER='clang++'
+        - Fortran_COMPILER='gfortran'
+        - PYTHON_EXECUTABLE=/usr/bin/python
+        - CRPROPA_DATA_PATH=$TRAVIS_BUILD_DIR/build/data/
+
+before_install:
+  - |
+    if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+      HOMEBREW_NO_AUTO_UPDATE=1 brew install swig;
+      HOMEBREW_NO_AUTO_UPDATE=1 brew install gcc || true;
+      HOMEBREW_NO_AUTO_UPDATE=1 brew link --overwrite gcc;
+    fi;
+
+before_script:
+  - mkdir build
+  - cd build
+  - |
+    DATAFILE=$HOME/crpropa_cache/data.tar.gz
+    if [ -f $DATAFILE ]; then
+      echo "Using data file from cache!"
+      cp $DATAFILE .
+    fi
+  - cmake .. -DENABLE_PYTHON=True -DPYTHON_EXECUTABLE=$PYTHON_EXECUTABLE -DENABLE_TESTING=On
+  - cp data.tar.gz $HOME/crpropa_cache
+script:
+  - make
+  - make test
+after_failure:
+  - cat Testing/Temporary/LastTest.log
+after_success:
+  - |
+    if [ $BUILD_DOC ] && [ $TRAVIS_BRANCH = "master" ] && [ $TRAVIS_PULL_REQUEST = "false" ] && [ $TRAVIS_REPO_SLUG = "CRPropa/CRPropa3" ]; then
+      make doc
+      openssl aes-256-cbc -K $encrypted_0581d1b3cf0a_key -iv $encrypted_0581d1b3cf0a_iv -in ../.travis/travis_deploy.enc -out travis_deploy -d
+      chmod 600 travis_deploy
+      eval "$(ssh-agent -s)"
+      ssh-add travis_deploy
+      cd html
+      git init
+      git checkout -b gh-pages
+      git add .
+      git -c user.name='travis' -c user.email='travis' commit -m `echo Build_$TRAVIS_COMMIT`
+      git push -f --set-upstream [email protected]:CRPropa/CRPropa3.git gh-pages
+    fi

AUTHORS.md

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+###CRPropa 3 Developers
+In chronological order with main contributions, see also [contributor list](https://github.com/CRPropa/CRPropa3/graphs/contributors).
+
+  * David Walz -- main developer
+  * Gero M�ller -- main developer
+  * Daniel Kuempel -- ROOT output
+  * Rafael Alves Batista -- SAGA interface
+  * Tobias Winchen -- Galactic lensing, DINT & EleCa integration
+  * Andrej Dundovic -- ParticleCollector, SWIG and github integration
+  * Marcus Wirtz -- PT11 GMF
+  * Christopher Heiter -- EM interactions, EM production channels
+  * Lukas Merten -- Diffusion module & infrastructure