Skip to content

Commit

Permalink
update documentation and 3 bgc namelist defaults
Browse files Browse the repository at this point in the history
  • Loading branch information
apcraig committed Sep 12, 2024
1 parent 0fbfbf4 commit 066ffc7
Show file tree
Hide file tree
Showing 3 changed files with 9 additions and 9 deletions.
6 changes: 3 additions & 3 deletions cicecore/drivers/unittest/opticep/ice_init_column.F90
Original file line number Diff line number Diff line change
Expand Up @@ -1053,15 +1053,15 @@ subroutine input_zbgc
tr_bgc_N = .true. !

! brine height parameter
phi_snow = -0.3_dbl_kind ! snow porosity
phi_snow = -1.0_dbl_kind ! snow porosity

! skl biology parameters
bgc_flux_type = 'Jin2006'! type of ocean-ice poston velocity ('constant')

! z biology parameters
grid_o = 0.006 ! for bottom flux
grid_o_t = 0.006 ! for top flux
l_sk = 20.0_dbl_kind ! characteristic diffusive scale (m)
l_sk = 2.0_dbl_kind ! characteristic diffusive scale (m)
initbio_frac = c1 ! fraction of ocean trcr concentration in bio trcrs
frazil_scav = 0.8_dbl_kind ! increase in initial bio tracer from ocean scavenging
ratio_Si2N_diatoms = 1.8_dbl_kind ! algal Si to N (mol/mol)
Expand All @@ -1081,7 +1081,7 @@ subroutine input_zbgc
ratio_Fe2DOC_l = 0.033_dbl_kind ! Fe to C of DOC (nmol/umol) lipids
fr_resp = 0.05_dbl_kind ! frac of algal growth lost due to respiration
tau_min = 3600.0_dbl_kind ! rapid mobile to stationary exchanges (s)
tau_max = 7776000_dbl_kind! long time mobile to stationary exchanges (s)
tau_max = 604800._dbl_kind! long time mobile to stationary exchanges (s)
algal_vel = 1.0e-7_dbl_kind ! 0.5 cm/d(m/s) Lavoie 2005 1.5 cm/day
R_dFe2dust = 0.035_dbl_kind ! g/g (3.5% content) Tagliabue 2009
dustFe_sol = 0.005_dbl_kind ! solubility fraction
Expand Down
6 changes: 3 additions & 3 deletions cicecore/shared/ice_init_column.F90
Original file line number Diff line number Diff line change
Expand Up @@ -1053,15 +1053,15 @@ subroutine input_zbgc
tr_bgc_N = .true. !

! brine height parameter
phi_snow = -0.3_dbl_kind ! snow porosity
phi_snow = -1.0_dbl_kind ! snow porosity

! skl biology parameters
bgc_flux_type = 'Jin2006'! type of ocean-ice poston velocity ('constant')

! z biology parameters
grid_o = 0.006 ! for bottom flux
grid_o_t = 0.006 ! for top flux
l_sk = 20.0_dbl_kind ! characteristic diffusive scale (m)
l_sk = 2.0_dbl_kind ! characteristic diffusive scale (m)
initbio_frac = c1 ! fraction of ocean trcr concentration in bio trcrs
frazil_scav = 0.8_dbl_kind ! increase in initial bio tracer from ocean scavenging
ratio_Si2N_diatoms = 1.8_dbl_kind ! algal Si to N (mol/mol)
Expand All @@ -1081,7 +1081,7 @@ subroutine input_zbgc
ratio_Fe2DOC_l = 0.033_dbl_kind ! Fe to C of DOC (nmol/umol) lipids
fr_resp = 0.05_dbl_kind ! frac of algal growth lost due to respiration
tau_min = 3600.0_dbl_kind ! rapid mobile to stationary exchanges (s)
tau_max = 7776000_dbl_kind! long time mobile to stationary exchanges (s)
tau_max = 604800._dbl_kind! long time mobile to stationary exchanges (s)
algal_vel = 1.0e-7_dbl_kind ! 0.5 cm/d(m/s) Lavoie 2005 1.5 cm/day
R_dFe2dust = 0.035_dbl_kind ! g/g (3.5% content) Tagliabue 2009
dustFe_sol = 0.005_dbl_kind ! solubility fraction
Expand Down
6 changes: 3 additions & 3 deletions doc/source/user_guide/ug_case_settings.rst
Original file line number Diff line number Diff line change
Expand Up @@ -828,7 +828,7 @@ zbgc_nml
"``K_Sil_phaeo``", "real", "silicate half saturation phaeocystis mmol/m^3", "0.0"
"``K_Sil_sp``", "real", "silicate half saturation small plankton mmol/m^3", "0.0"
"``kn_bac_protein``", "real", "bacterial degradation of DON per day", "0.2"
"``l_sk``", "real", "characteristic diffusive scale in m", "20.0"
"``l_sk``", "real", "characteristic diffusive scale in m", "2.0"
"``l_skS``", "real", "zsalinity DEPRECATED", ""
"``max_dfe_doc1``", "real", "max ratio of dFe to saccharides in the ice in nm Fe / muM C", "0.2"
"``max_loss``", "real", "restrict uptake to percent of remaining value", "0.9"
Expand All @@ -844,7 +844,7 @@ zbgc_nml
"``mu_max_sp``", "real", "maximum growth rate small plankton per day", "0.41"
"``nitratetype``", "real", "mobility type between stationary and mobile nitrate", "-1.0"
"``op_dep_min``", "real", "light attenuates for optical depths exceeding min", "0.1"
"``phi_snow``", "real", "snow porosity for brine height tracer", "-0.3"
"``phi_snow``", "real", "snow porosity for brine height tracer", "-1.0"
"``ratio_chl2N_diatoms``", "real", "algal chl to N in mg/mmol diatoms", "2.1"
"``ratio_chl2N_phaeo``", "real", "algal chl to N in mg/mmol phaeocystis", "0.84"
"``ratio_chl2N_sp``", "real", "algal chl to N in mg/mmol small plankton", "1.1"
Expand Down Expand Up @@ -877,7 +877,7 @@ zbgc_nml
"``skl_bgc``", "logical", "skeletal biogeochemistry DEPRECATED", "``.false.``"
"``solve_zbgc``", "logical", "", "``.false.``"
"``solve_zsal``", "logical", "zsalinity DEPRECATED, update salinity tracer profile", "``.false.``"
"``tau_max``", "real", "long time mobile to stationary exchanges", "7776000."
"``tau_max``", "real", "long time mobile to stationary exchanges", "604800."
"``tau_min``", "real", "rapid module to stationary exchanges", "3600."
"``tr_bgc_Am``", "logical", "ammonium tracer", "``.false.``"
"``tr_bgc_C``", "logical", "algal carbon tracer", "``.false.``"
Expand Down

0 comments on commit 066ffc7

Please sign in to comment.