Merge pull request #173 from CHOP-CGTInformatics/joss-feedback-2

Joss Feedback 2

paper/paper.bib

@@ -50,7 +50,7 @@ @Manual{r_cit
 }
 
 @Manual{redcapr_cit,
-  title = {REDCapR: Interaction Between R and REDCap},
+  title = {{REDCapR: Interaction Between R and REDCap}},
   author = {Will Beasley},
   year = {2023},
   url = {https://ouhscbbmc.github.io/REDCapR/},
@@ -71,7 +71,7 @@ @Manual{redcapdm_cit
   author = {João Carmezim and Judith Peñafiel and Pau Satorra and Esther García and Natàlia Pallarés and Cristian Tebé},
   year = {2023},
   note = {R package version 0.8.0},
-  url = {https://ubidi.github.io/REDCapDM/},
+  url = {https://bruigtp.github.io/REDCapDM/},
 }
 
 @Manual{tidyredcap_cit,
@@ -102,13 +102,14 @@ @Manual{skimr_cit
   author = {Elin Waring and Michael Quinn and Amelia McNamara and Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis},
   year = {2023},
   note = {R package version 2.1.5, https://github.com/ropensci/skimr/},
-  url = {https://docs.ropensci.org/skimr/ (website)},
+  url = {https://docs.ropensci.org/skimr/},
 }
 
 @Manual{tibble_cit,
   title = {tibble: Simple Data Frames},
   author = {Kirill Müller and Hadley Wickham},
   year = {2023},
+  url = {https://tibble.tidyverse.org/},
   note = {https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble},
 }
 

paper/paper.md

@@ -62,7 +62,7 @@ As of 2023, the REDCap Consortium boasts nearly 3 million users across over 150
 
 REDCap databases that contain repeating events and instruments require significant manual pre-processing, a major pain point for researchers and analysts. This is because the REDCap API returns a single table (Figure 1) that includes data from instruments that record data at different levels of granularity.
 
-While several existing REDCap packages are available (Table 1), `REDCapTidieR` distinguishes itself by offering analysts a unique framework that returns a tidy data structure regardless of the size or complexity of the extracted database. Packages such as [`tidyREDCap`](https://raymondbalise.github.io/tidyREDCap/) [@tidyredcap_cit] and [`REDCapDM`](https://ubidi.github.io/REDCapDM/index.html) [@redcapdm_cit] also offer tools for data processing, while `redcapAPI` gives a wealth of options for data export in addition to features that break apart the block matrix using a base R framework. However, only `REDCapTidieR` deconstructs the block matrix into easily joinable tidy tables that form their own composite primary keys to preserve the relationships between each other in accordance with their unique granularity.
+While several existing REDCap packages are available (Table 1), `REDCapTidieR` distinguishes itself by offering analysts a unique framework that returns a tidy data structure regardless of the size or complexity of the extracted database. Packages such as [`tidyREDCap`](https://raymondbalise.github.io/tidyREDCap/) [@tidyredcap_cit] and [`REDCapDM`](https://bruigtp.github.io/REDCapDM/) [@redcapdm_cit] also offer tools for data processing, while `redcapAPI` gives a wealth of options for data export in addition to features that break apart the block matrix using a base R framework. However, only `REDCapTidieR` deconstructs the block matrix into easily joinable tidy tables that form their own composite primary keys to preserve the relationships between each other in accordance with their unique granularity.
 
 `REDCapTidieR` is built with production readiness in mind. In addition to an extensive 98% coverage test suite, `REDCapTidieR` execution is evaluated against 15 test databases that cover many complex configuration scenarios. It also provides ample documentation through a `pkgdown` [site](https://chop-cgtinformatics.github.io/REDCapTidieR/index.html) [@redcaptidier_pkgdown_cit]. It is also built on top of `REDCapR`, which contains its own extensive test suite, and evaluated against an additional 26 test databases. `REDCapTidieR` meets the rigorous requirements of the [OpenSSF Best Practices Badge](https://www.bestpractices.dev/en/projects/6845) [@openssf_cit], which certifies open-source projects that adhere to criteria for delivering high-quality, robust, and secure software.