YML syntax #2
Workflow file for this run
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| name: Continuous integration in containers | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| Containerized-CI: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [ifort, ifx, nvfortran] | |
| include: | |
| # Set flags for Intel Fortran Compiler Classic | |
| - compiler: ifort | |
| fcflags: -m64 -g -traceback -heap-arrays -assume realloc_lhs -extend-source 132 -check bounds,uninit,pointers,stack -stand f08 | |
| # Set flags for Intel Fortran Compiler | |
| - compiler: ifx | |
| fcflags: -debug -traceback -O0 -heap-arrays -assume realloc_lhs -extend-source 132 -stand f08 | |
| # Set flags for NVIDIA Fortran compiler | |
| - compiler: nvfortran | |
| fcflags: -Mallocatable=03 -Mstandard -Mbounds -Mchkptr -Kieee -Mchkstk | |
| # Set container images | |
| - compiler: ifort | |
| image: ghcr.io/earth-system-radiation/rte-rrtmgp-ci:oneapi | |
| - compiler: ifx | |
| image: ghcr.io/earth-system-radiation/rte-rrtmgp-ci:oneapi | |
| - compiler: nvfortran | |
| image: ghcr.io/earth-system-radiation/rte-rrtmgp-ci:nvhpc | |
| container: | |
| image: ${{ matrix.image }} | |
| env: | |
| F90: ${{ matrix.compiler }} | |
| FC: ${{ matrix.compiler }} | |
| F90FLAGS: ${{ matrix.fcflags }} | |
| # Make variables: | |
| NFHOME: /opt/netcdf-fortran | |
| ATOL: 0.0 | |
| RTOL: 0.0 | |
| KGO_VERSION: v002 | |
| steps: | |
| ############################################################################### | |
| # Build COSP and retrieve input and test files | |
| ############################################################################### | |
| # Build COSP2 driver. Intel Fortran stores automatic arrays in the stack | |
| # by default, whereas GNU Fortran stores them in the heap. This can cause | |
| # segmentation faults with ifort, especially in memory-intensive applications | |
| # like COSP. We tell ifort to use heap arrays. | |
| - name: Build driver | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh || true | |
| ${F90} --version | |
| cd build | |
| make -j driver | |
| # Retrieve and expand large data files | |
| - name: Retrieve data files | |
| run: | | |
| GDFILE='https://docs.google.com/uc?export=download&id=17eK4_DVEvFOE9Uf6siXJDpWZJKT1aqkU' | |
| OUTPATH=driver/data/inputs/UKMO/cosp_input.um_global.nc.gz | |
| wget --no-check-certificate $GDFILE -O $OUTPATH | |
| gunzip ${OUTPATH} | |
| cd driver/data/inputs/UKMO | |
| md5sum -c cosp_input.um_global.nc.md5 | |
| cd ${GITHUB_WORKSPACE} | |
| GDFILE='https://docs.google.com/uc?export=download&id=1s5Ha6Hqnv_hWbRUs8KQpJ4Lxy8uvJDar' | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output.um_global.gfortran.kgo.$KGO_VERSION.nc.gz | |
| wget --no-check-certificate $GDFILE -O $OUTPATH | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output.um_global.gfortran.kgo.$KGO_VERSION.nc.md5 | |
| cd ${GITHUB_WORKSPACE} | |
| GDFILE='https://docs.google.com/uc?export=download&id=11dKcIL3EQr7s6jbo4f9GsoW0SufesGbq' | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output_um.gfortran.kgo.$KGO_VERSION.nc.gz | |
| wget --no-check-certificate $GDFILE -O $OUTPATH | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output_um.gfortran.kgo.$KGO_VERSION.nc.md5 | |
| cd ${GITHUB_WORKSPACE} | |
| GDFILE='https://docs.google.com/uc?export=download&id=1kY1lRgzd0UhDiQef2u-VgTQql_iut3U2' | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output.um_global_model_levels.gfortran.kgo.$KGO_VERSION.nc.gz | |
| wget --no-check-certificate $GDFILE -O $OUTPATH | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output.um_global_model_levels.gfortran.kgo.$KGO_VERSION.nc.md5 | |
| ############################################################################### | |
| # Run COSP2 tests. We could run both tests in one step, but | |
| # doing it this way the output is easier to interpret. | |
| ############################################################################### | |
| # 1. Basic test | |
| - name: Basic test, UM global snapshot | |
| run: | | |
| cd driver/run | |
| ./cosp2_test cosp2_input_nl.txt | |
| ./cosp2_test cosp2_input_nl.um_global.txt | |
| ############################################################################### | |
| # Compare results against known good outputs. As above, | |
| # we split it in as many steps as tests. | |
| ############################################################################### | |
| # 1. Basic test | |
| - name: Basic against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output_um.gfortran.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output_um.nc | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} | |
| # 2. UM global snapshot. The approach used for the basic test would needed | |
| # large tolerances for the ifort compiler. We keep tolerances small for ifort, | |
| # and then we test against the output table. | |
| - name: UM global against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output.um_global.gfortran.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output.um_global.nc | |
| ATOL=1.0e-20 | |
| RTOL=0.0006 | |
| OUTTST=data/outputs/UKMO/cosp2_output.um_global.out | |
| OUTKGO=data/outputs/UKMO/cosp2_output.um_global.${F90}.kgo.${KGO_VERSION}.out | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} \ | |
| --noerror=True --stats_file=${OUTTST} | |
| diff ${OUTKGO} ${OUTTST} | |
| ############################################################################### | |
| # Produce plots when it fails during global snapshot tests, | |
| # and create a tarball with outputs. | |
| ############################################################################### | |
| - name: Produce plots and create tarball | |
| if: failure() | |
| run: | | |
| TST_MLEV=data/outputs/UKMO/cosp2_output.um_global_model_levels.nc | |
| cd driver | |
| if [[ -e data/outputs/UKMO/cosp2_output.um_global.nc ]]; then | |
| python plot_test_outputs.py | |
| fi | |
| if [[ -e data/outputs/UKMO/cosp2_output.um_global_model_levels.nc ]]; then | |
| python plot_test_outputs.py --tst_file=$TST_MLEV | |
| fi | |
| cd data/outputs/UKMO | |
| tar --ignore-failed-read -czf outputs.UKMO.tgz cosp2_output.um_global.nc \ | |
| cosp2_output_um.nc cosp2_output.um_global_model_levels.nc *.png \ | |
| cosp2_output.um_global.out | |
| ls -lh | |
| ############################################################################### | |
| # Make output files available if any test fails | |
| ############################################################################### | |
| - name: Upload output file if test fails | |
| if: failure() | |
| uses: actions/[email protected] | |
| with: | |
| name: outputs.UKMO.tgz | |
| path: driver/data/outputs/UKMO/outputs.UKMO.tgz |