Bump actions/upload-artifact from 4.4.3 to 4.5.0 #403
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| # (c) British Crown Copyright 2020, the Met Office. | |
| # All rights reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # | |
| # * Redistributions of source code must retain the above copyright notice, | |
| # this list of conditions and the following disclaimer. | |
| # * Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # * Neither the name of the Met Office nor the names of its contributors may | |
| # be used to endorse or promote products derived from this softwarewithout | |
| # specific prior written permission. | |
| # | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | |
| # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | |
| # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | |
| # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE | |
| # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | |
| # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF | |
| # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS | |
| # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN | |
| # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) | |
| # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF | |
| # THE POSSIBILITY OF SUCH DAMAGE. | |
| # Workflow for continuous integration tests | |
| name: Continuous integration gfortran compilers | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| # This workflow contains a single job called "ci_gfortran" | |
| ci_gfortran: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [gfortran-10, gfortran-11, gfortran-12] | |
| python-version: [3.11] | |
| include: | |
| - compiler_short_name: gfortran | |
| - kgo_version: v003 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| F90: ${{ matrix.compiler }} | |
| FC: ${{ matrix.compiler }} | |
| F90FLAGS: "-O3 -ffree-line-length-none -fcheck=bounds -finit-real=nan" | |
| NFHOME: /usr | |
| ATOL: 0.0 | |
| RTOL: 0.0 | |
| KGO_VERSION: ${{ matrix.kgo_version }} | |
| GDKGO1: https://docs.google.com/uc?export=download&id=1oQBJGFg0F8k-LhRGsCYn-qWzmMMVfQ6K | |
| GDKGO2: https://docs.google.com/uc?export=download&id=1b7qwJWqDzoZGcIP0qyUprTV_LErCGpT6 | |
| GDKGO3: https://docs.google.com/uc?export=download&id=1NvTo3bYaGpz-FUpZ4jta_kRzA04xTCsn | |
| F90_SHORT_NAME: ${{ matrix.compiler_short_name }} | |
| # Sequence of tasks that will be executed as part of the job | |
| steps: | |
| ############################################################################### | |
| # Initial steps | |
| ############################################################################### | |
| # Checks-out repository under $GITHUB_WORKSPACE | |
| - uses: actions/checkout@v4 | |
| # Set up conda environment | |
| - name: Setup conda environment | |
| uses: conda-incubator/[email protected] | |
| with: | |
| auto-update-conda: true | |
| activate-environment: ci-env | |
| environment-file: build/environment.yml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| # NetCDF C and FORTRAN libraries | |
| - name: Install NetCDF library | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev | |
| ############################################################################### | |
| # Build COSP and retrieve input and test files | |
| ############################################################################### | |
| # Build COSP2 driver. | |
| - name: Build driver | |
| run: | | |
| ${F90} --version | |
| cd build | |
| make -j driver | |
| # Retrieve and expand large data files | |
| - name: Retrieve input files | |
| run: | | |
| GDFILE='https://docs.google.com/uc?export=download&id=17eK4_DVEvFOE9Uf6siXJDpWZJKT1aqkU' | |
| OUTPATH=driver/data/inputs/UKMO/cosp_input.um_global.nc.gz | |
| curl -sSfL -o $OUTPATH $GDFILE | |
| gunzip ${OUTPATH} | |
| cd driver/data/inputs/UKMO | |
| md5sum -c cosp_input.um_global.nc.md5 | |
| - name: Retrieve KGOs for basic test | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output_um.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.gz | |
| curl -sSfL -o $OUTPATH $GDKGO1 | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output_um.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.md5 | |
| - name: Retrieve KGOs for global test | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output.um_global.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.gz | |
| curl -sSfL -o $OUTPATH $GDKGO2 | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output.um_global.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.md5 | |
| cd ${GITHUB_WORKSPACE} | |
| - name: Retrieve KGOs for global test with outputs on model levels | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output.um_global_model_levels.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.gz | |
| curl -sSfL -o $OUTPATH $GDKGO3 | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| md5sum -c cosp2_output.um_global_model_levels.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc.md5 | |
| ############################################################################### | |
| # Run COSP2 tests. We could run both tests in one step, but | |
| # doing it this way the output is easier to interpret. | |
| ############################################################################### | |
| # 1. Basic test | |
| - name: Basic test, UM global snapshot | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh || true | |
| cd driver/run | |
| ./cosp2_test cosp2_input_nl.txt | |
| ./cosp2_test cosp2_input_nl.um_global.txt | |
| # 2. UM global snapshot. Diagnostics on model levels. | |
| - name: UM global snapshot. Diagnostics on model levels. | |
| run: | | |
| cd driver/run | |
| ./cosp2_test cosp2_input_nl.um_global_model_levels.txt cosp2_output_nl.um_global_model_levels.txt | |
| ############################################################################### | |
| # Compare results against known good outputs. As above, | |
| # we split it in as many steps as tests. | |
| ############################################################################### | |
| # 1. Basic test | |
| - name: Basic against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output_um.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output_um.nc | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} | |
| # 2. UM global snapshot. | |
| - name: UM global against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output.um_global.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output.um_global.nc | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} | |
| # 3. UM global snapshot. Diagnostics on model levels. | |
| - name: UM global on model levels against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output.um_global_model_levels.${F90_SHORT_NAME}.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output.um_global_model_levels.nc | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} | |
| ############################################################################### | |
| # Produce plots when it fails during global snapshot tests, | |
| # and create a tarball with outputs. | |
| ############################################################################### | |
| - name: Produce plots and create tarball | |
| if: failure() | |
| run: | | |
| TST_MLEV=data/outputs/UKMO/cosp2_output.um_global_model_levels.nc | |
| cd driver | |
| if [[ -e data/outputs/UKMO/cosp2_output.um_global.nc ]]; then | |
| python plot_test_outputs.py | |
| fi | |
| if [[ -e data/outputs/UKMO/cosp2_output.um_global_model_levels.nc ]]; then | |
| python plot_test_outputs.py --tst_file=$TST_MLEV | |
| fi | |
| cd data/outputs/UKMO | |
| tar --ignore-failed-read -czf outputs.${{ matrix.compiler }}.UKMO.tgz cosp2_output.um_global.nc \ | |
| cosp2_output_um.nc cosp2_output.um_global_model_levels.nc *.png \ | |
| cosp2_output.um_global.out | |
| ls -lh | |
| ############################################################################### | |
| # Make output files available if any test fails | |
| ############################################################################### | |
| - name: Upload output file if test fails | |
| if: failure() | |
| uses: actions/[email protected] | |
| with: | |
| name: outputs.${{ matrix.compiler }}.UKMO.tgz | |
| path: driver/data/outputs/UKMO/outputs.${{ matrix.compiler }}.UKMO.tgz |