Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0 #134
Workflow file for this run
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| name: Continuous integration in containers | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| Containerized-CI: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [ifort, ifx] | |
| include: | |
| # Flags and KGOs for Intel Fortran Compiler Classic | |
| - compiler: ifort | |
| fcflags: -m64 -g -traceback -heap-arrays -assume realloc_lhs -extend-source 132 -check bounds,uninit,pointers,stack -stand f08 | |
| gdkgo1: https://docs.google.com/uc?export=download&id=1dva4lq4ZXciTiuOvGgA8OUJKihbGQ90K | |
| gdkgo2: https://docs.google.com/uc?export=download&id=1ns0OtWU5jVnu1IEBfBN-tlTkq2PTrcvC | |
| # Flags and KGOs for Intel Fortran Compiler | |
| - compiler: ifx | |
| fcflags: -debug -traceback -O0 -heap-arrays -assume realloc_lhs -extend-source 132 -stand f08 | |
| gdkgo1: https://docs.google.com/uc?export=download&id=1WzFsoqi0EZfsyyh203QXmUQTIh5tBm9b | |
| gdkgo2: https://docs.google.com/uc?export=download&id=1ezYqG-jfZ6i9bRgKOWUyBiQlMhtncpKj | |
| # Set container images | |
| - compiler: ifort | |
| image: ghcr.io/earth-system-radiation/rte-rrtmgp-ci:oneapi | |
| - compiler: ifx | |
| image: ghcr.io/earth-system-radiation/rte-rrtmgp-ci:oneapi | |
| # Common variables | |
| - kgo_version: v004 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| container: | |
| image: ${{ matrix.image }} | |
| env: | |
| F90: ${{ matrix.compiler }} | |
| FC: ${{ matrix.compiler }} | |
| F90FLAGS: ${{ matrix.fcflags }} | |
| # Make variables: | |
| NFHOME: /opt/netcdf-fortran | |
| # KGO tests variables | |
| ATOL: 0.0 | |
| RTOL: 0.0 | |
| KGO_VERSION: ${{ matrix.kgo_version }} | |
| GDKGO1: ${{ matrix.gdkgo1 }} | |
| GDKGO2: ${{ matrix.gdkgo2 }} | |
| steps: | |
| # | |
| # Checks-out repository under $GITHUB_WORKSPACE | |
| # | |
| - uses: actions/checkout@v4 | |
| # Set up conda environment | |
| - name: Setup conda environment | |
| uses: conda-incubator/[email protected] | |
| with: | |
| auto-update-conda: true | |
| activate-environment: ci-env | |
| environment-file: build/environment.yml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| ############################################################################### | |
| # Build COSP and retrieve input and test files | |
| ############################################################################### | |
| # Build COSP2 driver. Intel Fortran stores automatic arrays in the stack | |
| # by default, whereas GNU Fortran stores them in the heap. This can cause | |
| # segmentation faults with ifort, especially in memory-intensive applications | |
| # like COSP. We tell ifort to use heap arrays. | |
| - name: Build driver | |
| run: | | |
| ${F90} --version | |
| cd build | |
| make -j driver | |
| # Retrieve and expand large data files | |
| - name: Retrieve input files | |
| run: | | |
| GDFILE='https://docs.google.com/uc?export=download&id=17eK4_DVEvFOE9Uf6siXJDpWZJKT1aqkU' | |
| OUTPATH=driver/data/inputs/UKMO/cosp_input.um_global.nc.gz | |
| curl -sSfL -o $OUTPATH $GDFILE | |
| gunzip ${OUTPATH} | |
| cd driver/data/inputs/UKMO | |
| md5sum -c cosp_input.um_global.nc.md5 | |
| - name: Retrieve KGOs for basic test | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output_um.$F90.kgo.$KGO_VERSION.nc.gz | |
| curl -sSfL -o $OUTPATH $GDKGO1 | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| # md5sum -c cosp2_output_um.${F90}.kgo.$KGO_VERSION.nc.md5 | |
| - name: Retrieve KGOs for global test | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| OUTPATH=driver/data/outputs/UKMO/cosp2_output.um_global.${F90}.kgo.$KGO_VERSION.nc.gz | |
| curl -sSfL -o $OUTPATH $GDKGO2 | |
| gunzip ${OUTPATH} | |
| cd driver/data/outputs/UKMO | |
| # md5sum -c cosp2_output.um_global.${F90}.kgo.$KGO_VERSION.nc.md5 | |
| ############################################################################### | |
| # Run COSP2 tests. Basic test and UM global snapshot | |
| ############################################################################### | |
| - name: Basic test and UM global snapshot | |
| run: | | |
| cd driver/run | |
| ./cosp2_test cosp2_input_nl.txt | |
| ./cosp2_test cosp2_input_nl.um_global.txt | |
| ############################################################################### | |
| # Compare results against known good outputs. As above, | |
| # we split it in as many steps as tests. | |
| ############################################################################### | |
| # 1. Basic test | |
| - name: Basic against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output_um.${{ matrix.compiler }}.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output_um.nc | |
| STATS=data/outputs/UKMO/cosp2_output_um.${{ matrix.compiler }}.out | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} --stats_file=${STATS} | |
| # 2. UM global snapshot. | |
| - name: UM global against known good output (KGO) | |
| run: | | |
| cd driver | |
| KGO=data/outputs/UKMO/cosp2_output.um_global.${{ matrix.compiler }}.kgo.$KGO_VERSION.nc | |
| TST=data/outputs/UKMO/cosp2_output.um_global.nc | |
| STATS=data/outputs/UKMO/cosp2_output.um_global.${{ matrix.compiler }}.out | |
| python compare_to_kgo.py ${KGO} ${TST} --atol=${ATOL} --rtol=${RTOL} --stats_file=${STATS} | |
| ############################################################################### | |
| # Produce plots when it fails during global snapshot tests, | |
| # and create a tarball with outputs. | |
| ############################################################################### | |
| - name: Produce plots and create tarball | |
| if: failure() | |
| run: | | |
| cd driver | |
| if [[ -e data/outputs/UKMO/cosp2_output.um_global.nc ]]; then | |
| python plot_test_outputs.py | |
| fi | |
| cd data/outputs/UKMO | |
| tar --ignore-failed-read -czf outputs.${{ matrix.compiler }}.UKMO.tgz cosp2_output.um_global.nc \ | |
| cosp2_output_um.nc *.png cosp2_output*.${{ matrix.compiler }}.out | |
| ls -lh | |
| ############################################################################### | |
| # Make output files available if any test fails | |
| ############################################################################### | |
| - name: Upload output file if test fails | |
| if: failure() | |
| uses: actions/[email protected] | |
| with: | |
| name: outputs.${{ matrix.compiler }}.UKMO.tgz | |
| path: driver/data/outputs/UKMO/outputs.${{ matrix.compiler }}.UKMO.tgz |