Merge pull request #4 from CFDML/ci

Add github actions

.github/workflows/ci.yml

@@ -0,0 +1,61 @@
+# This is a basic workflow to help you get started with Actions
+
+name: CI
+
+# Controls when the action will run. 
+on:
+  # Triggers the workflow on push or pull request events but only for the main branch
+  push:
+    branches: [ main, dev ]
+  pull_request:
+    branches: [ main, dev ]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    if: "!contains(github.event.head_commit.message, 'skip ci')"
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.10'
+#          - 'nightly'
+        os:
+          - ubuntu-latest
+#          - macOS-latest
+#          - windows-latest
+        arch:
+          - x64
+    steps:
+      - run: |
+          pip3 install meshio scipy --user
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@latest
+      - run: |
+          git config --global user.name Tester
+          git config --global user.email [email protected]
+      - uses: julia-actions/julia-runtest@latest
+        continue-on-error: ${{ matrix.version == 'nightly' }}
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info

.github/workflows/compat.yml

@@ -0,0 +1,16 @@
+name: CompatHelper
+
+on:
+  schedule:
+    - cron: '00 00 * * *'
+
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/format.yml

@@ -0,0 +1,31 @@
+name: FormatPR
+on:
+  schedule:
+    - cron: '0 0 * * *'
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/cache@v1
+      - name: Install JuliaFormatter and format
+        run: |
+          julia  -e 'import Pkg; Pkg.add("JuliaFormatter")'
+          julia  -e 'using JuliaFormatter; format(".")'
+
+      # https://github.com/marketplace/actions/create-pull-request
+      # https://github.com/peter-evans/create-pull-request#reference-example
+      - name: Create Pull Request
+        id: cpr
+        uses: peter-evans/create-pull-request@v3
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: Format .jl files
+          title: 'Automatic JuliaFormatter.jl run'
+          branch: auto-juliaformatter-pr
+          delete-branch: true
+          labels: formatting, automated pr, no changelog
+      - name: Check outputs
+        run: |
+          echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}"
+          echo "Pull Request URL - ${{ steps.cpr.outputs.pull-request-url }}"

.github/workflows/tag.yml

@@ -0,0 +1,12 @@
+name: TagBot
+on:
+  schedule:
+    - cron: 0 0 * * *
+jobs:
+  TagBot:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

lib/P4estTypes/src/connectivity.jl

@@ -236,7 +236,6 @@ end
     |        | /
     |        |/
     1--------3
- 
 """
 function Connectivity{X}(vertices::AbstractVector, cells::AbstractVector) where {X}
     if X == 4
@@ -292,7 +291,8 @@ function Base.:(==)(x::Connectivity{8}, y::Connectivity{8})
     p8est_connectivity_is_equivalent(x.pointer, y.pointer) == 1
 end
 
-Base.isvalid(c::Connectivity{4}) = GC.@preserve c p4est_connectivity_is_valid(c.pointer) == 1
+Base.isvalid(c::Connectivity{4}) =
+    GC.@preserve c p4est_connectivity_is_valid(c.pointer) == 1
 Base.sizeof(c::Connectivity{4}) = Int(p4est_connectivity_memory_used(c.pointer))
 
 Base.isvalid(c::Connectivity{8}) = p8est_connectivity_is_valid(c.pointer) == 1

lib/P4estTypes/src/ghost.jl

@@ -43,13 +43,14 @@ Construct a ghost layer of quadrants that neighbor the local to the rank
 for the given `forest`.  Here `connection` determines what neighboring
 quadrants to include (across face, edge, corner, or full) and can take the
 values:
-- `P4estTypes.CONNECT_FULL(Val(4))`: get face and corner neighbors.
-- `P4estTypes.CONNECT_FULL(Val(8))`: get face, edge, and corner neighbors.
-- `P4estTypes.CONNECT_FACE(Val(4))`: get face neighbors.
-- `P4estTypes.CONNECT_FACE(Val(8))`: get face neighbors.
-- `P4estTypes.CONNECT_EDGE(Val(8))`: get face and edge neighbors.
-- `P4estTypes.CONNECT_CORNER(Val(4))`: get face and corner neighbors.
-- `P4estTypes.CONNECT_CORNER(Val(8)): `get face, edge, and corner neighbors.
+
+  - `P4estTypes.CONNECT_FULL(Val(4))`: get face and corner neighbors.
+  - `P4estTypes.CONNECT_FULL(Val(8))`: get face, edge, and corner neighbors.
+  - `P4estTypes.CONNECT_FACE(Val(4))`: get face neighbors.
+  - `P4estTypes.CONNECT_FACE(Val(8))`: get face neighbors.
+  - `P4estTypes.CONNECT_EDGE(Val(8))`: get face and edge neighbors.
+  - `P4estTypes.CONNECT_CORNER(Val(4))`: get face and corner neighbors.
+  - `P4estTypes.CONNECT_CORNER(Val(8)): `get face, edge, and corner neighbors.
 """
 function ghostlayer(forest::Pxest{X}; connection = CONNECT_FULL(Val(X))) where {X}
     return GhostLayer{X}((pxest_ghost_new(Val(X)))(forest, connection))
@@ -160,6 +161,7 @@ end
 Returns 0-based indices into `mirror_proc_mirrors` for each rank.  This includes
 an extra entry at the end of the array so that 1-based range into
 `mirror_proc_mirrors` for rank `r` can be built with
+
 ```
 (mirror_proc_offsets[r]+1):mirror_proc_offsets[r+1]
 ```
@@ -184,10 +186,13 @@ end
 Returns 0-based indices into [`ghosts`](@ref) for each rank.  This includes
 an extra entry at the end of the array so that 1-based range into
 [`ghosts`](@ref) for rank `r` can be built with
+
 ```
 (proc_offsets[r]+1):proc_offsets[r+1]
 ```
+
 Thus the ghost quadrants associated with rank `r` can be obtained with
+
 ```
 ghosts(ghost)[(proc_offsets[r]+1):proc_offsets[r+1]]
 ```
@@ -212,10 +217,12 @@ end
 Returns 0-based indices into [`mirrors`](@ref).  This is used in conjunction
 with `mirror_proc_offsets` to get the mirror quadrants associated with
 each rank.  For example
+
 ```
 rrange = (mirror_proc_offsets[r]+1):mirror_proc_offsets[r+1]
 mirrors(ghost)[mirror_proc_mirrors(rrange)]
 ```
+
 selects the mirror quadrants associated with rank `r`.
 
 See `@doc P4estTypes.P4est.p4est_ghost_t` and