ci: update pipeline

.github/workflows/check.yml

@@ -35,6 +35,6 @@ jobs:
         coverage run --source=bmlab -m pytest tests
     - name: Lint with flake8
       run: |
-        flake8 .
+        flake8 --exclude _version.py .
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3

.github/workflows/deploy_pypi.yml

@@ -25,7 +25,7 @@ jobs:
         pip install -e .
     - name: Build and publish
       env:
-        TWINE_USERNAME: ci_bm
+        TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.PYPI_PWD }}
       run: |
         python setup.py sdist bdist_wheel

.readthedocs.yml

@@ -7,4 +7,4 @@ python:
     - requirements: docs/requirements.txt
     - method: pip
       path: .
-  system_packages: false
+

CHANGELOG

@@ -60,7 +60,7 @@
 
 ### Fixed
 - Don't fail on empty arc #138
-- Fix issues with flake8 v5, lock scipy version #139
+- Fix issues with flake8 --exclude _version.py .5, lock scipy version #139
 
 ## 0.2.3 - 2022-07-01
 

docs/sec_develop.rst

@@ -42,7 +42,7 @@ Continuous integration
 ======================
 The following things are automated:
 
-- pytest and flake8 on Linux, macOS, and Windows via GitHub Actions:
+- pytest and flake8 --exclude _version.py .n Linux, macOS, and Windows via GitHub Actions:
   https://github.com/BrillouinMicroscopy/bmlab/actions?query=workflow%3AChecks
 
   You should always check that all checks pass before you merge a pull request