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BouchardLab · Jul 29, 2021 · 199ab7c · 199ab7c
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diff --git a/analysis/mars/io/common.py → analysis/io_tools/io/common.py b/analysis/mars/io/common.py → analysis/io_tools/io/common.py
diff --git a/analysis/mars/io/nsenwb.py → analysis/io_tools/io/nsenwb.py b/analysis/mars/io/nsenwb.py → analysis/io_tools/io/nsenwb.py
diff --git a/analysis/mars/preprocess.py → analysis/io_tools/preprocess.py b/analysis/mars/preprocess.py → analysis/io_tools/preprocess.py
diff --git a/analysis/mars/preprocess_100um.sh → analysis/io_tools/preprocess_100um.sh b/analysis/mars/preprocess_100um.sh → analysis/io_tools/preprocess_100um.sh
diff --git a/analysis/mars/preprocess_layer_ei.py → analysis/io_tools/preprocess_layer_ei.py b/analysis/mars/preprocess_layer_ei.py → analysis/io_tools/preprocess_layer_ei.py
diff --git a/analysis/mars/preprocess_layers.sh → analysis/io_tools/preprocess_layers.sh b/analysis/mars/preprocess_layers.sh → analysis/io_tools/preprocess_layers.sh
diff --git a/analysis/mars/preprocess_slices.py → analysis/io_tools/preprocess_slices.py b/analysis/mars/preprocess_slices.py → analysis/io_tools/preprocess_slices.py
diff --git a/analysis/mars/signal_processing/__init__.py → ...is/io_tools/signal_processing/__init__.py b/analysis/mars/signal_processing/__init__.py → ...is/io_tools/signal_processing/__init__.py
diff --git a/analysis/mars/signal_processing/bandpass.py → ...is/io_tools/signal_processing/bandpass.py b/analysis/mars/signal_processing/bandpass.py → ...is/io_tools/signal_processing/bandpass.py
diff --git a/...s/signal_processing/common_referencing.py → ...s/signal_processing/common_referencing.py b/...s/signal_processing/common_referencing.py → ...s/signal_processing/common_referencing.py
diff --git a/analysis/mars/signal_processing/fft.py → analysis/io_tools/signal_processing/fft.py b/analysis/mars/signal_processing/fft.py → analysis/io_tools/signal_processing/fft.py
diff --git a/...rs/signal_processing/hilbert_transform.py → ...ls/signal_processing/hilbert_transform.py b/...rs/signal_processing/hilbert_transform.py → ...ls/signal_processing/hilbert_transform.py
diff --git a/...mars/signal_processing/linenoise_notch.py → ...ools/signal_processing/linenoise_notch.py b/...mars/signal_processing/linenoise_notch.py → ...ools/signal_processing/linenoise_notch.py
diff --git a/analysis/mars/signal_processing/resample.py → ...is/io_tools/signal_processing/resample.py b/analysis/mars/signal_processing/resample.py → ...is/io_tools/signal_processing/resample.py
diff --git a/analysis/mars/signal_processing/smooth.py → ...ysis/io_tools/signal_processing/smooth.py b/analysis/mars/signal_processing/smooth.py → ...ysis/io_tools/signal_processing/smooth.py
diff --git a/analysis/mars/utils/bands.py → analysis/io_tools/utils/bands.py b/analysis/mars/utils/bands.py → analysis/io_tools/utils/bands.py
diff --git a/analysis/mars/wn/wn_tokenize.py → analysis/io_tools/wn/wn_tokenize.py b/analysis/mars/wn/wn_tokenize.py → analysis/io_tools/wn/wn_tokenize.py
diff --git a/bmtk-vb/CONTRIBUTING.md → brain-modeling-tooolkit/CONTRIBUTING.md b/bmtk-vb/CONTRIBUTING.md → brain-modeling-tooolkit/CONTRIBUTING.md
diff --git a/bmtk-vb/LICENSE.txt → brain-modeling-tooolkit/LICENSE.txt b/bmtk-vb/LICENSE.txt → brain-modeling-tooolkit/LICENSE.txt
diff --git a/bmtk-vb/README.md → brain-modeling-tooolkit/README.md b/bmtk-vb/README.md → brain-modeling-tooolkit/README.md
diff --git a/bmtk-vb/bmtk.egg-info/PKG-INFO → ...-modeling-tooolkit/bmtk.egg-info/PKG-INFO b/bmtk-vb/bmtk.egg-info/PKG-INFO → ...-modeling-tooolkit/bmtk.egg-info/PKG-INFO
diff --git a/bmtk-vb/bmtk.egg-info/SOURCES.txt → ...deling-tooolkit/bmtk.egg-info/SOURCES.txt b/bmtk-vb/bmtk.egg-info/SOURCES.txt → ...deling-tooolkit/bmtk.egg-info/SOURCES.txt
diff --git a/bmtk-vb/bmtk.egg-info/dependency_links.txt → ...oolkit/bmtk.egg-info/dependency_links.txt b/bmtk-vb/bmtk.egg-info/dependency_links.txt → ...oolkit/bmtk.egg-info/dependency_links.txt
diff --git a/bmtk-vb/bmtk.egg-info/requires.txt → ...eling-tooolkit/bmtk.egg-info/requires.txt b/bmtk-vb/bmtk.egg-info/requires.txt → ...eling-tooolkit/bmtk.egg-info/requires.txt
diff --git a/bmtk-vb/bmtk.egg-info/top_level.txt → ...ling-tooolkit/bmtk.egg-info/top_level.txt b/bmtk-vb/bmtk.egg-info/top_level.txt → ...ling-tooolkit/bmtk.egg-info/top_level.txt
diff --git a/bmtk-vb/bmtk/__init__.py → brain-modeling-tooolkit/bmtk/__init__.py b/bmtk-vb/bmtk/__init__.py → brain-modeling-tooolkit/bmtk/__init__.py
diff --git a/bmtk-vb/bmtk/__init__.pyc → brain-modeling-tooolkit/bmtk/__init__.pyc b/bmtk-vb/bmtk/__init__.pyc → brain-modeling-tooolkit/bmtk/__init__.pyc
diff --git a/.../bmtk/__pycache__/__init__.cpython-35.pyc → .../bmtk/__pycache__/__init__.cpython-35.pyc b/.../bmtk/__pycache__/__init__.cpython-35.pyc → .../bmtk/__pycache__/__init__.cpython-35.pyc
diff --git a/.../bmtk/__pycache__/__init__.cpython-36.pyc → .../bmtk/__pycache__/__init__.cpython-36.pyc b/.../bmtk/__pycache__/__init__.cpython-36.pyc → .../bmtk/__pycache__/__init__.cpython-36.pyc
diff --git a/.../bmtk/__pycache__/__init__.cpython-37.pyc → .../bmtk/__pycache__/__init__.cpython-37.pyc b/.../bmtk/__pycache__/__init__.cpython-37.pyc → .../bmtk/__pycache__/__init__.cpython-37.pyc
diff --git a/bmtk-vb/bmtk/analyzer/__init__.py → ...deling-tooolkit/bmtk/analyzer/__init__.py b/bmtk-vb/bmtk/analyzer/__init__.py → ...deling-tooolkit/bmtk/analyzer/__init__.py
diff --git a/bmtk-vb/bmtk/analyzer/__init__.pyc → ...eling-tooolkit/bmtk/analyzer/__init__.pyc b/bmtk-vb/bmtk/analyzer/__init__.pyc → ...eling-tooolkit/bmtk/analyzer/__init__.pyc
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diff --git a/bmtk-vb/bmtk/analyzer/cell_vars.py → ...eling-tooolkit/bmtk/analyzer/cell_vars.py b/bmtk-vb/bmtk/analyzer/cell_vars.py → ...eling-tooolkit/bmtk/analyzer/cell_vars.py
diff --git a/bmtk-vb/bmtk/analyzer/firing_rates.py → ...ng-tooolkit/bmtk/analyzer/firing_rates.py b/bmtk-vb/bmtk/analyzer/firing_rates.py → ...ng-tooolkit/bmtk/analyzer/firing_rates.py
diff --git a/bmtk-vb/bmtk/analyzer/io_tools.py → ...deling-tooolkit/bmtk/analyzer/io_tools.py b/bmtk-vb/bmtk/analyzer/io_tools.py → ...deling-tooolkit/bmtk/analyzer/io_tools.py
diff --git a/bmtk-vb/bmtk/analyzer/spike_trains.py → ...ng-tooolkit/bmtk/analyzer/spike_trains.py b/bmtk-vb/bmtk/analyzer/spike_trains.py → ...ng-tooolkit/bmtk/analyzer/spike_trains.py
diff --git a/bmtk-vb/bmtk/analyzer/spikes_analyzer.py → ...tooolkit/bmtk/analyzer/spikes_analyzer.py b/bmtk-vb/bmtk/analyzer/spikes_analyzer.py → ...tooolkit/bmtk/analyzer/spikes_analyzer.py
diff --git a/bmtk-vb/bmtk/analyzer/spikes_loader.py → ...g-tooolkit/bmtk/analyzer/spikes_loader.py b/bmtk-vb/bmtk/analyzer/spikes_loader.py → ...g-tooolkit/bmtk/analyzer/spikes_loader.py
diff --git a/bmtk-vb/bmtk/analyzer/utils.py → ...-modeling-tooolkit/bmtk/analyzer/utils.py b/bmtk-vb/bmtk/analyzer/utils.py → ...-modeling-tooolkit/bmtk/analyzer/utils.py
diff --git a/...b/bmtk/analyzer/visualization/__init__.py → ...t/bmtk/analyzer/visualization/__init__.py b/...b/bmtk/analyzer/visualization/__init__.py → ...t/bmtk/analyzer/visualization/__init__.py
diff --git a/.../bmtk/analyzer/visualization/__init__.pyc → .../bmtk/analyzer/visualization/__init__.pyc b/.../bmtk/analyzer/visualization/__init__.pyc → .../bmtk/analyzer/visualization/__init__.pyc
diff --git a/...ation/__pycache__/__init__.cpython-37.pyc → ...ation/__pycache__/__init__.cpython-37.pyc b/...ation/__pycache__/__init__.cpython-37.pyc → ...ation/__pycache__/__init__.cpython-37.pyc
diff --git a/...ization/__pycache__/spikes.cpython-37.pyc → ...ization/__pycache__/spikes.cpython-37.pyc b/...ization/__pycache__/spikes.cpython-37.pyc → ...ization/__pycache__/spikes.cpython-37.pyc
diff --git a/...vb/bmtk/analyzer/visualization/rasters.py → ...it/bmtk/analyzer/visualization/rasters.py b/...vb/bmtk/analyzer/visualization/rasters.py → ...it/bmtk/analyzer/visualization/rasters.py
diff --git a/...-vb/bmtk/analyzer/visualization/spikes.py → ...kit/bmtk/analyzer/visualization/spikes.py b/...-vb/bmtk/analyzer/visualization/spikes.py → ...kit/bmtk/analyzer/visualization/spikes.py
diff --git a/...vb/bmtk/analyzer/visualization/spikes.pyc → ...it/bmtk/analyzer/visualization/spikes.pyc b/...vb/bmtk/analyzer/visualization/spikes.pyc → ...it/bmtk/analyzer/visualization/spikes.pyc
diff --git a/...vb/bmtk/analyzer/visualization/widgets.py → ...it/bmtk/analyzer/visualization/widgets.py b/...vb/bmtk/analyzer/visualization/widgets.py → ...it/bmtk/analyzer/visualization/widgets.py
diff --git a/bmtk-vb/bmtk/builder/__init__.py → ...odeling-tooolkit/bmtk/builder/__init__.py b/bmtk-vb/bmtk/builder/__init__.py → ...odeling-tooolkit/bmtk/builder/__init__.py
diff --git a/bmtk-vb/bmtk/builder/__init__.pyc → ...deling-tooolkit/bmtk/builder/__init__.pyc b/bmtk-vb/bmtk/builder/__init__.pyc → ...deling-tooolkit/bmtk/builder/__init__.pyc
diff --git a/...ilder/__pycache__/__init__.cpython-37.pyc → ...ilder/__pycache__/__init__.cpython-37.pyc b/...ilder/__pycache__/__init__.cpython-37.pyc → ...ilder/__pycache__/__init__.cpython-37.pyc
diff --git a/...__pycache__/connection_map.cpython-37.pyc → ...__pycache__/connection_map.cpython-37.pyc b/...__pycache__/connection_map.cpython-37.pyc → ...__pycache__/connection_map.cpython-37.pyc
diff --git a/...lder/__pycache__/connector.cpython-37.pyc → ...lder/__pycache__/connector.cpython-37.pyc b/...lder/__pycache__/connector.cpython-37.pyc → ...lder/__pycache__/connector.cpython-37.pyc
diff --git a/...k/builder/__pycache__/edge.cpython-37.pyc → ...k/builder/__pycache__/edge.cpython-37.pyc b/...k/builder/__pycache__/edge.cpython-37.pyc → ...k/builder/__pycache__/edge.cpython-37.pyc
diff --git a/.../__pycache__/functor_cache.cpython-37.pyc → .../__pycache__/functor_cache.cpython-37.pyc b/.../__pycache__/functor_cache.cpython-37.pyc → .../__pycache__/functor_cache.cpython-37.pyc
diff --git a/...r/__pycache__/id_generator.cpython-37.pyc → ...r/__pycache__/id_generator.cpython-37.pyc b/...r/__pycache__/id_generator.cpython-37.pyc → ...r/__pycache__/id_generator.cpython-37.pyc
diff --git a/...ilder/__pycache__/iterator.cpython-37.pyc → ...ilder/__pycache__/iterator.cpython-37.pyc b/...ilder/__pycache__/iterator.cpython-37.pyc → ...ilder/__pycache__/iterator.cpython-37.pyc
diff --git a/...uilder/__pycache__/network.cpython-37.pyc → ...uilder/__pycache__/network.cpython-37.pyc b/...uilder/__pycache__/network.cpython-37.pyc → ...uilder/__pycache__/network.cpython-37.pyc
diff --git a/...k/builder/__pycache__/node.cpython-37.pyc → ...k/builder/__pycache__/node.cpython-37.pyc b/...k/builder/__pycache__/node.cpython-37.pyc → ...k/builder/__pycache__/node.cpython-37.pyc
diff --git a/...lder/__pycache__/node_pool.cpython-37.pyc → ...lder/__pycache__/node_pool.cpython-37.pyc b/...lder/__pycache__/node_pool.cpython-37.pyc → ...lder/__pycache__/node_pool.cpython-37.pyc
diff --git a/...ilder/__pycache__/node_set.cpython-37.pyc → ...ilder/__pycache__/node_set.cpython-37.pyc b/...ilder/__pycache__/node_set.cpython-37.pyc → ...ilder/__pycache__/node_set.cpython-37.pyc
diff --git a/bmtk-vb/bmtk/builder/aux/__init__.py → ...ing-tooolkit/bmtk/builder/aux/__init__.py b/bmtk-vb/bmtk/builder/aux/__init__.py → ...ing-tooolkit/bmtk/builder/aux/__init__.py
diff --git a/bmtk-vb/bmtk/builder/aux/__init__.pyc → ...ng-tooolkit/bmtk/builder/aux/__init__.pyc b/bmtk-vb/bmtk/builder/aux/__init__.pyc → ...ng-tooolkit/bmtk/builder/aux/__init__.pyc
diff --git a/bmtk-vb/bmtk/builder/aux/edge_connectors.py → ...olkit/bmtk/builder/aux/edge_connectors.py b/bmtk-vb/bmtk/builder/aux/edge_connectors.py → ...olkit/bmtk/builder/aux/edge_connectors.py
diff --git a/bmtk-vb/bmtk/builder/aux/edge_connectors.pyc → ...lkit/bmtk/builder/aux/edge_connectors.pyc b/bmtk-vb/bmtk/builder/aux/edge_connectors.pyc → ...lkit/bmtk/builder/aux/edge_connectors.pyc
diff --git a/bmtk-vb/bmtk/builder/aux/node_params.py → ...-tooolkit/bmtk/builder/aux/node_params.py b/bmtk-vb/bmtk/builder/aux/node_params.py → ...-tooolkit/bmtk/builder/aux/node_params.py
diff --git a/bmtk-vb/bmtk/builder/aux/node_params.pyc → ...tooolkit/bmtk/builder/aux/node_params.pyc b/bmtk-vb/bmtk/builder/aux/node_params.pyc → ...tooolkit/bmtk/builder/aux/node_params.pyc
diff --git a/bmtk-vb/bmtk/builder/bionet/__init__.py → ...-tooolkit/bmtk/builder/bionet/__init__.py b/bmtk-vb/bmtk/builder/bionet/__init__.py → ...-tooolkit/bmtk/builder/bionet/__init__.py
diff --git a/bmtk-vb/bmtk/builder/bionet/swc_reader.py → ...ooolkit/bmtk/builder/bionet/swc_reader.py b/bmtk-vb/bmtk/builder/bionet/swc_reader.py → ...ooolkit/bmtk/builder/bionet/swc_reader.py
diff --git a/bmtk-vb/bmtk/builder/connection_map.py → ...g-tooolkit/bmtk/builder/connection_map.py b/bmtk-vb/bmtk/builder/connection_map.py → ...g-tooolkit/bmtk/builder/connection_map.py
diff --git a/bmtk-vb/bmtk/builder/connection_map.pyc → ...-tooolkit/bmtk/builder/connection_map.pyc b/bmtk-vb/bmtk/builder/connection_map.pyc → ...-tooolkit/bmtk/builder/connection_map.pyc
diff --git a/bmtk-vb/bmtk/builder/connector.py → ...deling-tooolkit/bmtk/builder/connector.py b/bmtk-vb/bmtk/builder/connector.py → ...deling-tooolkit/bmtk/builder/connector.py
diff --git a/bmtk-vb/bmtk/builder/connector.pyc → ...eling-tooolkit/bmtk/builder/connector.pyc b/bmtk-vb/bmtk/builder/connector.pyc → ...eling-tooolkit/bmtk/builder/connector.pyc
diff --git a/bmtk-vb/bmtk/builder/edge.py → brain-modeling-tooolkit/bmtk/builder/edge.py b/bmtk-vb/bmtk/builder/edge.py → brain-modeling-tooolkit/bmtk/builder/edge.py
diff --git a/bmtk-vb/bmtk/builder/edge.pyc → ...n-modeling-tooolkit/bmtk/builder/edge.pyc b/bmtk-vb/bmtk/builder/edge.pyc → ...n-modeling-tooolkit/bmtk/builder/edge.pyc
diff --git a/bmtk-vb/bmtk/builder/formats/__init__.py → ...tooolkit/bmtk/builder/formats/__init__.py b/bmtk-vb/bmtk/builder/formats/__init__.py → ...tooolkit/bmtk/builder/formats/__init__.py
diff --git a/bmtk-vb/bmtk/builder/formats/hdf5_format.py → ...olkit/bmtk/builder/formats/hdf5_format.py b/bmtk-vb/bmtk/builder/formats/hdf5_format.py → ...olkit/bmtk/builder/formats/hdf5_format.py
diff --git a/bmtk-vb/bmtk/builder/formats/iformats.py → ...tooolkit/bmtk/builder/formats/iformats.py b/bmtk-vb/bmtk/builder/formats/iformats.py → ...tooolkit/bmtk/builder/formats/iformats.py
diff --git a/bmtk-vb/bmtk/builder/functor_cache.py → ...ng-tooolkit/bmtk/builder/functor_cache.py b/bmtk-vb/bmtk/builder/functor_cache.py → ...ng-tooolkit/bmtk/builder/functor_cache.py
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diff --git a/bmtk-vb/bmtk/builder/id_generator.py → ...ing-tooolkit/bmtk/builder/id_generator.py b/bmtk-vb/bmtk/builder/id_generator.py → ...ing-tooolkit/bmtk/builder/id_generator.py
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diff --git a/bmtk-vb/bmtk/builder/io/__init__.py → ...ling-tooolkit/bmtk/builder/io/__init__.py b/bmtk-vb/bmtk/builder/io/__init__.py → ...ling-tooolkit/bmtk/builder/io/__init__.py
diff --git a/bmtk-vb/bmtk/builder/iterator.py → ...odeling-tooolkit/bmtk/builder/iterator.py b/bmtk-vb/bmtk/builder/iterator.py → ...odeling-tooolkit/bmtk/builder/iterator.py
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diff --git a/bmtk-vb/bmtk/builder/network.py → ...modeling-tooolkit/bmtk/builder/network.py b/bmtk-vb/bmtk/builder/network.py → ...modeling-tooolkit/bmtk/builder/network.py
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diff --git a/bmtk-vb/bmtk/builder/networks/__init__.py → ...ooolkit/bmtk/builder/networks/__init__.py b/bmtk-vb/bmtk/builder/networks/__init__.py → ...ooolkit/bmtk/builder/networks/__init__.py
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diff --git a/bmtk-vb/bmtk/builder/networks/dm_network.py → ...olkit/bmtk/builder/networks/dm_network.py b/bmtk-vb/bmtk/builder/networks/dm_network.py → ...olkit/bmtk/builder/networks/dm_network.py
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diff --git a/...vb/bmtk/builder/networks/input_network.py → ...it/bmtk/builder/networks/input_network.py b/...vb/bmtk/builder/networks/input_network.py → ...it/bmtk/builder/networks/input_network.py
diff --git a/bmtk-vb/bmtk/builder/networks/mpi_network.py → ...lkit/bmtk/builder/networks/mpi_network.py b/bmtk-vb/bmtk/builder/networks/mpi_network.py → ...lkit/bmtk/builder/networks/mpi_network.py
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diff --git a/bmtk-vb/bmtk/builder/networks/nxnetwork.py → ...oolkit/bmtk/builder/networks/nxnetwork.py b/bmtk-vb/bmtk/builder/networks/nxnetwork.py → ...oolkit/bmtk/builder/networks/nxnetwork.py
diff --git a/...b/bmtk/builder/networks/sparse_network.py → ...t/bmtk/builder/networks/sparse_network.py b/...b/bmtk/builder/networks/sparse_network.py → ...t/bmtk/builder/networks/sparse_network.py
diff --git a/bmtk-vb/bmtk/builder/node.py → brain-modeling-tooolkit/bmtk/builder/node.py b/bmtk-vb/bmtk/builder/node.py → brain-modeling-tooolkit/bmtk/builder/node.py
diff --git a/bmtk-vb/bmtk/builder/node.pyc → ...n-modeling-tooolkit/bmtk/builder/node.pyc b/bmtk-vb/bmtk/builder/node.pyc → ...n-modeling-tooolkit/bmtk/builder/node.pyc
diff --git a/bmtk-vb/bmtk/builder/node_pool.py → ...deling-tooolkit/bmtk/builder/node_pool.py b/bmtk-vb/bmtk/builder/node_pool.py → ...deling-tooolkit/bmtk/builder/node_pool.py
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diff --git a/bmtk-vb/bmtk/builder/node_set.py → ...odeling-tooolkit/bmtk/builder/node_set.py b/bmtk-vb/bmtk/builder/node_set.py → ...odeling-tooolkit/bmtk/builder/node_set.py
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diff --git a/bmtk-vb/bmtk/simulator/bionet/io_tools.py → ...ooolkit/bmtk/simulator/bionet/io_tools.py b/bmtk-vb/bmtk/simulator/bionet/io_tools.py → ...ooolkit/bmtk/simulator/bionet/io_tools.py
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diff --git a/bmtk-vb/bmtk/simulator/bionet/nrn.pyc → ...ng-tooolkit/bmtk/simulator/bionet/nrn.pyc b/bmtk-vb/bmtk/simulator/bionet/nrn.pyc → ...ng-tooolkit/bmtk/simulator/bionet/nrn.pyc
diff --git a/...bmtk/simulator/bionet/pointprocesscell.py → ...bmtk/simulator/bionet/pointprocesscell.py b/...bmtk/simulator/bionet/pointprocesscell.py → ...bmtk/simulator/bionet/pointprocesscell.py
diff --git a/...mtk/simulator/bionet/pointprocesscell.pyc → ...mtk/simulator/bionet/pointprocesscell.pyc b/...mtk/simulator/bionet/pointprocesscell.pyc → ...mtk/simulator/bionet/pointprocesscell.pyc
diff --git a/...vb/bmtk/simulator/bionet/pointsomacell.py → ...it/bmtk/simulator/bionet/pointsomacell.py b/...vb/bmtk/simulator/bionet/pointsomacell.py → ...it/bmtk/simulator/bionet/pointsomacell.py
diff --git a/...b/bmtk/simulator/bionet/pointsomacell.pyc → ...t/bmtk/simulator/bionet/pointsomacell.pyc b/...b/bmtk/simulator/bionet/pointsomacell.pyc → ...t/bmtk/simulator/bionet/pointsomacell.pyc
diff --git a/...bmtk/simulator/bionet/pyfunction_cache.py → ...bmtk/simulator/bionet/pyfunction_cache.py b/...bmtk/simulator/bionet/pyfunction_cache.py → ...bmtk/simulator/bionet/pyfunction_cache.py
diff --git a/...mtk/simulator/bionet/pyfunction_cache.pyc → ...mtk/simulator/bionet/pyfunction_cache.pyc b/...mtk/simulator/bionet/pyfunction_cache.pyc → ...mtk/simulator/bionet/pyfunction_cache.pyc
diff --git a/...mulator/bionet/schemas/config_schema.json → ...mulator/bionet/schemas/config_schema.json b/...mulator/bionet/schemas/config_schema.json → ...mulator/bionet/schemas/config_schema.json
diff --git a/...ulator/bionet/schemas/csv_edge_types.json → ...ulator/bionet/schemas/csv_edge_types.json b/...ulator/bionet/schemas/csv_edge_types.json → ...ulator/bionet/schemas/csv_edge_types.json
diff --git a/...onet/schemas/csv_node_types_external.json → ...onet/schemas/csv_node_types_external.json b/...onet/schemas/csv_node_types_external.json → ...onet/schemas/csv_node_types_external.json
diff --git a/...onet/schemas/csv_node_types_internal.json → ...onet/schemas/csv_node_types_internal.json b/...onet/schemas/csv_node_types_internal.json → ...onet/schemas/csv_node_types_internal.json
diff --git a/...or/bionet/schemas/csv_nodes_external.json → ...or/bionet/schemas/csv_nodes_external.json b/...or/bionet/schemas/csv_nodes_external.json → ...or/bionet/schemas/csv_nodes_external.json
diff --git a/...or/bionet/schemas/csv_nodes_internal.json → ...or/bionet/schemas/csv_nodes_internal.json b/...or/bionet/schemas/csv_nodes_internal.json → ...or/bionet/schemas/csv_nodes_internal.json
diff --git a/.../bmtk/simulator/bionet/sonata_adaptors.py → .../bmtk/simulator/bionet/sonata_adaptors.py b/.../bmtk/simulator/bionet/sonata_adaptors.py → .../bmtk/simulator/bionet/sonata_adaptors.py
diff --git a/...bmtk/simulator/bionet/sonata_adaptors.pyc → ...bmtk/simulator/bionet/sonata_adaptors.pyc b/...bmtk/simulator/bionet/sonata_adaptors.pyc → ...bmtk/simulator/bionet/sonata_adaptors.pyc
diff --git a/bmtk-vb/bmtk/simulator/bionet/utils.py → ...g-tooolkit/bmtk/simulator/bionet/utils.py b/bmtk-vb/bmtk/simulator/bionet/utils.py → ...g-tooolkit/bmtk/simulator/bionet/utils.py
diff --git a/bmtk-vb/bmtk/simulator/bionet/utils.pyc → ...-tooolkit/bmtk/simulator/bionet/utils.pyc b/bmtk-vb/bmtk/simulator/bionet/utils.pyc → ...-tooolkit/bmtk/simulator/bionet/utils.pyc
diff --git a/bmtk-vb/bmtk/simulator/bionet/virtualcell.py → ...lkit/bmtk/simulator/bionet/virtualcell.py b/bmtk-vb/bmtk/simulator/bionet/virtualcell.py → ...lkit/bmtk/simulator/bionet/virtualcell.py
diff --git a/...-vb/bmtk/simulator/bionet/virtualcell.pyc → ...kit/bmtk/simulator/bionet/virtualcell.pyc b/...-vb/bmtk/simulator/bionet/virtualcell.pyc → ...kit/bmtk/simulator/bionet/virtualcell.pyc
diff --git a/bmtk-vb/bmtk/simulator/core/__init__.py → ...-tooolkit/bmtk/simulator/core/__init__.py b/bmtk-vb/bmtk/simulator/core/__init__.py → ...-tooolkit/bmtk/simulator/core/__init__.py
diff --git a/bmtk-vb/bmtk/simulator/core/__init__.pyc → ...tooolkit/bmtk/simulator/core/__init__.pyc b/bmtk-vb/bmtk/simulator/core/__init__.pyc → ...tooolkit/bmtk/simulator/core/__init__.pyc
diff --git a/.../core/__pycache__/__init__.cpython-37.pyc → .../core/__pycache__/__init__.cpython-37.pyc b/.../core/__pycache__/__init__.cpython-37.pyc → .../core/__pycache__/__init__.cpython-37.pyc
diff --git a/.../core/__pycache__/io_tools.cpython-37.pyc → .../core/__pycache__/io_tools.cpython-37.pyc b/.../core/__pycache__/io_tools.cpython-37.pyc → .../core/__pycache__/io_tools.cpython-37.pyc
diff --git a/...__pycache__/network_reader.cpython-37.pyc → ...__pycache__/network_reader.cpython-37.pyc b/...__pycache__/network_reader.cpython-37.pyc → ...__pycache__/network_reader.cpython-37.pyc
diff --git a/...core/__pycache__/node_sets.cpython-37.pyc → ...core/__pycache__/node_sets.cpython-37.pyc b/...core/__pycache__/node_sets.cpython-37.pyc → ...core/__pycache__/node_sets.cpython-37.pyc
diff --git a/...core/__pycache__/simulator.cpython-37.pyc → ...core/__pycache__/simulator.cpython-37.pyc b/...core/__pycache__/simulator.cpython-37.pyc → ...core/__pycache__/simulator.cpython-37.pyc
diff --git a/...ycache__/simulator_network.cpython-37.pyc → ...ycache__/simulator_network.cpython-37.pyc b/...ycache__/simulator_network.cpython-37.pyc → ...ycache__/simulator_network.cpython-37.pyc
diff --git a/bmtk-vb/bmtk/simulator/core/config.py → ...ng-tooolkit/bmtk/simulator/core/config.py b/bmtk-vb/bmtk/simulator/core/config.py → ...ng-tooolkit/bmtk/simulator/core/config.py
diff --git a/...vb/bmtk/simulator/core/edge_population.py → ...it/bmtk/simulator/core/edge_population.py b/...vb/bmtk/simulator/core/edge_population.py → ...it/bmtk/simulator/core/edge_population.py
diff --git a/bmtk-vb/bmtk/simulator/core/graph.py → ...ing-tooolkit/bmtk/simulator/core/graph.py b/bmtk-vb/bmtk/simulator/core/graph.py → ...ing-tooolkit/bmtk/simulator/core/graph.py
diff --git a/bmtk-vb/bmtk/simulator/core/io_tools.py → ...-tooolkit/bmtk/simulator/core/io_tools.py b/bmtk-vb/bmtk/simulator/core/io_tools.py → ...-tooolkit/bmtk/simulator/core/io_tools.py
diff --git a/bmtk-vb/bmtk/simulator/core/io_tools.pyc → ...tooolkit/bmtk/simulator/core/io_tools.pyc b/bmtk-vb/bmtk/simulator/core/io_tools.pyc → ...tooolkit/bmtk/simulator/core/io_tools.pyc
diff --git a/...-vb/bmtk/simulator/core/network_reader.py → ...kit/bmtk/simulator/core/network_reader.py b/...-vb/bmtk/simulator/core/network_reader.py → ...kit/bmtk/simulator/core/network_reader.py
diff --git a/...vb/bmtk/simulator/core/network_reader.pyc → ...it/bmtk/simulator/core/network_reader.pyc b/...vb/bmtk/simulator/core/network_reader.pyc → ...it/bmtk/simulator/core/network_reader.pyc
diff --git a/...vb/bmtk/simulator/core/node_population.py → ...it/bmtk/simulator/core/node_population.py b/...vb/bmtk/simulator/core/node_population.py → ...it/bmtk/simulator/core/node_population.py
diff --git a/bmtk-vb/bmtk/simulator/core/node_sets.py → ...tooolkit/bmtk/simulator/core/node_sets.py b/bmtk-vb/bmtk/simulator/core/node_sets.py → ...tooolkit/bmtk/simulator/core/node_sets.py
diff --git a/bmtk-vb/bmtk/simulator/core/node_sets.pyc → ...ooolkit/bmtk/simulator/core/node_sets.pyc b/bmtk-vb/bmtk/simulator/core/node_sets.pyc → ...ooolkit/bmtk/simulator/core/node_sets.pyc
diff --git a/bmtk-vb/bmtk/simulator/core/simulator.py → ...tooolkit/bmtk/simulator/core/simulator.py b/bmtk-vb/bmtk/simulator/core/simulator.py → ...tooolkit/bmtk/simulator/core/simulator.py
diff --git a/bmtk-vb/bmtk/simulator/core/simulator.pyc → ...ooolkit/bmtk/simulator/core/simulator.pyc b/bmtk-vb/bmtk/simulator/core/simulator.pyc → ...ooolkit/bmtk/simulator/core/simulator.pyc
diff --git a/.../bmtk/simulator/core/simulator_network.py → .../bmtk/simulator/core/simulator_network.py b/.../bmtk/simulator/core/simulator_network.py → .../bmtk/simulator/core/simulator_network.py
diff --git a/...bmtk/simulator/core/simulator_network.pyc → ...bmtk/simulator/core/simulator_network.pyc b/...bmtk/simulator/core/simulator_network.pyc → ...bmtk/simulator/core/simulator_network.pyc
diff --git a/.../simulator/core/sonata_reader/__init__.py → .../simulator/core/sonata_reader/__init__.py b/.../simulator/core/sonata_reader/__init__.py → .../simulator/core/sonata_reader/__init__.py
diff --git a/...simulator/core/sonata_reader/__init__.pyc → ...simulator/core/sonata_reader/__init__.pyc b/...simulator/core/sonata_reader/__init__.pyc → ...simulator/core/sonata_reader/__init__.pyc
diff --git a/...eader/__pycache__/__init__.cpython-37.pyc → ...eader/__pycache__/__init__.cpython-37.pyc b/...eader/__pycache__/__init__.cpython-37.pyc → ...eader/__pycache__/__init__.cpython-37.pyc
diff --git a/...r/__pycache__/edge_adaptor.cpython-37.pyc → ...r/__pycache__/edge_adaptor.cpython-37.pyc b/...r/__pycache__/edge_adaptor.cpython-37.pyc → ...r/__pycache__/edge_adaptor.cpython-37.pyc
diff --git a/...__pycache__/network_reader.cpython-37.pyc → ...__pycache__/network_reader.cpython-37.pyc b/...__pycache__/network_reader.cpython-37.pyc → ...__pycache__/network_reader.cpython-37.pyc
diff --git a/...r/__pycache__/node_adaptor.cpython-37.pyc → ...r/__pycache__/node_adaptor.cpython-37.pyc b/...r/__pycache__/node_adaptor.cpython-37.pyc → ...r/__pycache__/node_adaptor.cpython-37.pyc
diff --git a/...ulator/core/sonata_reader/edge_adaptor.py → ...ulator/core/sonata_reader/edge_adaptor.py b/...ulator/core/sonata_reader/edge_adaptor.py → ...ulator/core/sonata_reader/edge_adaptor.py
diff --git a/...lator/core/sonata_reader/edge_adaptor.pyc → ...lator/core/sonata_reader/edge_adaptor.pyc b/...lator/core/sonata_reader/edge_adaptor.pyc → ...lator/core/sonata_reader/edge_adaptor.pyc
diff --git a/...ator/core/sonata_reader/network_reader.py → ...ator/core/sonata_reader/network_reader.py b/...ator/core/sonata_reader/network_reader.py → ...ator/core/sonata_reader/network_reader.py
diff --git a/...tor/core/sonata_reader/network_reader.pyc → ...tor/core/sonata_reader/network_reader.pyc b/...tor/core/sonata_reader/network_reader.pyc → ...tor/core/sonata_reader/network_reader.pyc
diff --git a/...ulator/core/sonata_reader/node_adaptor.py → ...ulator/core/sonata_reader/node_adaptor.py b/...ulator/core/sonata_reader/node_adaptor.py → ...ulator/core/sonata_reader/node_adaptor.py
diff --git a/...lator/core/sonata_reader/node_adaptor.pyc → ...lator/core/sonata_reader/node_adaptor.pyc b/...lator/core/sonata_reader/node_adaptor.pyc → ...lator/core/sonata_reader/node_adaptor.pyc
diff --git a/bmtk-vb/bmtk/simulator/filternet/__init__.py → ...lkit/bmtk/simulator/filternet/__init__.py b/bmtk-vb/bmtk/simulator/filternet/__init__.py → ...lkit/bmtk/simulator/filternet/__init__.py
diff --git a/bmtk-vb/bmtk/simulator/filternet/cell.py → ...tooolkit/bmtk/simulator/filternet/cell.py b/bmtk-vb/bmtk/simulator/filternet/cell.py → ...tooolkit/bmtk/simulator/filternet/cell.py
diff --git a/...b/bmtk/simulator/filternet/cell_models.py → ...t/bmtk/simulator/filternet/cell_models.py b/...b/bmtk/simulator/filternet/cell_models.py → ...t/bmtk/simulator/filternet/cell_models.py
diff --git a/bmtk-vb/bmtk/simulator/filternet/config.py → ...oolkit/bmtk/simulator/filternet/config.py b/bmtk-vb/bmtk/simulator/filternet/config.py → ...oolkit/bmtk/simulator/filternet/config.py
diff --git a/...tor/filternet/default_setters/__init__.py → ...tor/filternet/default_setters/__init__.py b/...tor/filternet/default_setters/__init__.py → ...tor/filternet/default_setters/__init__.py
diff --git a/...filternet/default_setters/cell_loaders.py → ...filternet/default_setters/cell_loaders.py b/...filternet/default_setters/cell_loaders.py → ...filternet/default_setters/cell_loaders.py
diff --git a/...bmtk/simulator/filternet/filternetwork.py → ...bmtk/simulator/filternet/filternetwork.py b/...bmtk/simulator/filternet/filternetwork.py → ...bmtk/simulator/filternet/filternetwork.py
diff --git a/bmtk-vb/bmtk/simulator/filternet/filters.py → ...olkit/bmtk/simulator/filternet/filters.py b/bmtk-vb/bmtk/simulator/filternet/filters.py → ...olkit/bmtk/simulator/filternet/filters.py
diff --git a/...tk/simulator/filternet/filtersimulator.py → ...tk/simulator/filternet/filtersimulator.py b/...tk/simulator/filternet/filtersimulator.py → ...tk/simulator/filternet/filtersimulator.py
diff --git a/bmtk-vb/bmtk/simulator/filternet/io_tools.py → ...lkit/bmtk/simulator/filternet/io_tools.py b/bmtk-vb/bmtk/simulator/filternet/io_tools.py → ...lkit/bmtk/simulator/filternet/io_tools.py
diff --git a/.../simulator/filternet/lgnmodel/__init__.py → .../simulator/filternet/lgnmodel/__init__.py b/.../simulator/filternet/lgnmodel/__init__.py → .../simulator/filternet/lgnmodel/__init__.py
diff --git a/.../lgnmodel/cell_metrics/sOFF_cell_data.csv → .../lgnmodel/cell_metrics/sOFF_cell_data.csv b/.../lgnmodel/cell_metrics/sOFF_cell_data.csv → .../lgnmodel/cell_metrics/sOFF_cell_data.csv
diff --git a/...t/lgnmodel/cell_metrics/sON_cell_data.csv → ...t/lgnmodel/cell_metrics/sON_cell_data.csv b/...t/lgnmodel/cell_metrics/sON_cell_data.csv → ...t/lgnmodel/cell_metrics/sON_cell_data.csv
diff --git a/...gnmodel/cell_metrics/sus_sus_cells_v3.csv → ...gnmodel/cell_metrics/sus_sus_cells_v3.csv b/...gnmodel/cell_metrics/sus_sus_cells_v3.csv → ...gnmodel/cell_metrics/sus_sus_cells_v3.csv
diff --git a/.../lgnmodel/cell_metrics/tOFF_cell_data.csv → .../lgnmodel/cell_metrics/tOFF_cell_data.csv b/.../lgnmodel/cell_metrics/tOFF_cell_data.csv → .../lgnmodel/cell_metrics/tOFF_cell_data.csv
diff --git a/...t/lgnmodel/cell_metrics/tON_cell_data.csv → ...t/lgnmodel/cell_metrics/tON_cell_data.csv b/...t/lgnmodel/cell_metrics/tON_cell_data.csv → ...t/lgnmodel/cell_metrics/tON_cell_data.csv
diff --git a/...model/cell_metrics/trans_sus_cells_v3.csv → ...model/cell_metrics/trans_sus_cells_v3.csv b/...model/cell_metrics/trans_sus_cells_v3.csv → ...model/cell_metrics/trans_sus_cells_v3.csv
diff --git a/...simulator/filternet/lgnmodel/cellmodel.py → ...simulator/filternet/lgnmodel/cellmodel.py b/...simulator/filternet/lgnmodel/cellmodel.py → ...simulator/filternet/lgnmodel/cellmodel.py
diff --git a/...tk/simulator/filternet/lgnmodel/cursor.py → ...tk/simulator/filternet/lgnmodel/cursor.py b/...tk/simulator/filternet/lgnmodel/cursor.py → ...tk/simulator/filternet/lgnmodel/cursor.py
diff --git a/...k/simulator/filternet/lgnmodel/fitfuns.py → ...k/simulator/filternet/lgnmodel/fitfuns.py b/...k/simulator/filternet/lgnmodel/fitfuns.py → ...k/simulator/filternet/lgnmodel/fitfuns.py
diff --git a/...tk/simulator/filternet/lgnmodel/kernel.py → ...tk/simulator/filternet/lgnmodel/kernel.py b/...tk/simulator/filternet/lgnmodel/kernel.py → ...tk/simulator/filternet/lgnmodel/kernel.py
diff --git a/...rnet/lgnmodel/lattice_unit_constructor.py → ...rnet/lgnmodel/lattice_unit_constructor.py b/...rnet/lgnmodel/lattice_unit_constructor.py → ...rnet/lgnmodel/lattice_unit_constructor.py
diff --git a/...simulator/filternet/lgnmodel/lgnmodel1.py → ...simulator/filternet/lgnmodel/lgnmodel1.py b/...simulator/filternet/lgnmodel/lgnmodel1.py → ...simulator/filternet/lgnmodel/lgnmodel1.py
diff --git a/...ulator/filternet/lgnmodel/linearfilter.py → ...ulator/filternet/lgnmodel/linearfilter.py b/...ulator/filternet/lgnmodel/linearfilter.py → ...ulator/filternet/lgnmodel/linearfilter.py
diff --git a/...tk/simulator/filternet/lgnmodel/lnunit.py → ...tk/simulator/filternet/lgnmodel/lnunit.py b/...tk/simulator/filternet/lgnmodel/lnunit.py → ...tk/simulator/filternet/lgnmodel/lnunit.py
diff --git a/...ator/filternet/lgnmodel/make_cell_list.py → ...ator/filternet/lgnmodel/make_cell_list.py b/...ator/filternet/lgnmodel/make_cell_list.py → ...ator/filternet/lgnmodel/make_cell_list.py
diff --git a/...mtk/simulator/filternet/lgnmodel/movie.py → ...mtk/simulator/filternet/lgnmodel/movie.py b/...mtk/simulator/filternet/lgnmodel/movie.py → ...mtk/simulator/filternet/lgnmodel/movie.py
diff --git a/...r/filternet/lgnmodel/poissongeneration.py → ...r/filternet/lgnmodel/poissongeneration.py b/...r/filternet/lgnmodel/poissongeneration.py → ...r/filternet/lgnmodel/poissongeneration.py
diff --git a/...ator/filternet/lgnmodel/singleunitcell.py → ...ator/filternet/lgnmodel/singleunitcell.py b/...ator/filternet/lgnmodel/singleunitcell.py → ...ator/filternet/lgnmodel/singleunitcell.py
diff --git a/...lator/filternet/lgnmodel/spatialfilter.py → ...lator/filternet/lgnmodel/spatialfilter.py b/...lator/filternet/lgnmodel/spatialfilter.py → ...lator/filternet/lgnmodel/spatialfilter.py
diff --git a/...ator/filternet/lgnmodel/temporalfilter.py → ...ator/filternet/lgnmodel/temporalfilter.py b/...ator/filternet/lgnmodel/temporalfilter.py → ...ator/filternet/lgnmodel/temporalfilter.py
diff --git a/...or/filternet/lgnmodel/transferfunction.py → ...or/filternet/lgnmodel/transferfunction.py b/...or/filternet/lgnmodel/transferfunction.py → ...or/filternet/lgnmodel/transferfunction.py
diff --git a/.../simulator/filternet/lgnmodel/util_fns.py → .../simulator/filternet/lgnmodel/util_fns.py b/.../simulator/filternet/lgnmodel/util_fns.py → .../simulator/filternet/lgnmodel/util_fns.py
diff --git a/...simulator/filternet/lgnmodel/utilities.py → ...simulator/filternet/lgnmodel/utilities.py b/...simulator/filternet/lgnmodel/utilities.py → ...simulator/filternet/lgnmodel/utilities.py
diff --git a/...k/simulator/filternet/modules/__init__.py → ...k/simulator/filternet/modules/__init__.py b/...k/simulator/filternet/modules/__init__.py → ...k/simulator/filternet/modules/__init__.py
diff --git a/.../bmtk/simulator/filternet/modules/base.py → .../bmtk/simulator/filternet/modules/base.py b/.../bmtk/simulator/filternet/modules/base.py → .../bmtk/simulator/filternet/modules/base.py
diff --git a/...ulator/filternet/modules/create_spikes.py → ...ulator/filternet/modules/create_spikes.py b/...ulator/filternet/modules/create_spikes.py → ...ulator/filternet/modules/create_spikes.py
diff --git a/...mulator/filternet/modules/record_rates.py → ...mulator/filternet/modules/record_rates.py b/...mulator/filternet/modules/record_rates.py → ...mulator/filternet/modules/record_rates.py
diff --git a/...k/simulator/filternet/pyfunction_cache.py → ...k/simulator/filternet/pyfunction_cache.py b/...k/simulator/filternet/pyfunction_cache.py → ...k/simulator/filternet/pyfunction_cache.py
diff --git a/...simulator/filternet/transfer_functions.py → ...simulator/filternet/transfer_functions.py b/...simulator/filternet/transfer_functions.py → ...simulator/filternet/transfer_functions.py
diff --git a/bmtk-vb/bmtk/simulator/filternet/utils.py → ...ooolkit/bmtk/simulator/filternet/utils.py b/bmtk-vb/bmtk/simulator/filternet/utils.py → ...ooolkit/bmtk/simulator/filternet/utils.py
diff --git a/...b/bmtk/simulator/mintnet/Image_Library.py → ...t/bmtk/simulator/mintnet/Image_Library.py b/...b/bmtk/simulator/mintnet/Image_Library.py → ...t/bmtk/simulator/mintnet/Image_Library.py
diff --git a/...lator/mintnet/Image_Library_Supervised.py → ...lator/mintnet/Image_Library_Supervised.py b/...lator/mintnet/Image_Library_Supervised.py → ...lator/mintnet/Image_Library_Supervised.py
diff --git a/bmtk-vb/bmtk/simulator/mintnet/__init__.py → ...oolkit/bmtk/simulator/mintnet/__init__.py b/bmtk-vb/bmtk/simulator/mintnet/__init__.py → ...oolkit/bmtk/simulator/mintnet/__init__.py
diff --git a/...or/mintnet/analysis/LocallySparseNoise.py → ...or/mintnet/analysis/LocallySparseNoise.py b/...or/mintnet/analysis/LocallySparseNoise.py → ...or/mintnet/analysis/LocallySparseNoise.py
diff --git a/...ulator/mintnet/analysis/StaticGratings.py → ...ulator/mintnet/analysis/StaticGratings.py b/...ulator/mintnet/analysis/StaticGratings.py → ...ulator/mintnet/analysis/StaticGratings.py
diff --git a/...tk/simulator/mintnet/analysis/__init__.py → ...tk/simulator/mintnet/analysis/__init__.py b/...tk/simulator/mintnet/analysis/__init__.py → ...tk/simulator/mintnet/analysis/__init__.py
diff --git a/...vb/bmtk/simulator/mintnet/hmax/C_Layer.py → ...it/bmtk/simulator/mintnet/hmax/C_Layer.py b/...vb/bmtk/simulator/mintnet/hmax/C_Layer.py → ...it/bmtk/simulator/mintnet/hmax/C_Layer.py
diff --git a/...k/simulator/mintnet/hmax/Readout_Layer.py → ...k/simulator/mintnet/hmax/Readout_Layer.py b/...k/simulator/mintnet/hmax/Readout_Layer.py → ...k/simulator/mintnet/hmax/Readout_Layer.py
diff --git a/...b/bmtk/simulator/mintnet/hmax/S1_Layer.py → ...t/bmtk/simulator/mintnet/hmax/S1_Layer.py b/...b/bmtk/simulator/mintnet/hmax/S1_Layer.py → ...t/bmtk/simulator/mintnet/hmax/S1_Layer.py