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Neuronunit reduced cells#348

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russelljjarvis wants to merge 132 commits intoBlueBrain:masterBlueBrain/BluePyOpt:masterfrom russelljjarvis:neuronunit_reduced_cellsrusselljjarvis/BluePyOpt:neuronunit_reduced_cellsCopy head branch name to clipboard

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Commits

Commits on Jan 30, 2021

• adding in appropriate notebooks, removed call to pebble pool in neuronunit BPO class

  russelljjarvis

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• third example

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• adding in single file

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• reverted algorithms file to the original

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• reintroduce constructor BPO_deap_opt() argument/ neuronunit=boolean flag, which went missing at time of pull request

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Commits on Jan 31, 2021

• Update README.md

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• Update README.md

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• update build instructions pertaining to git to see if using different git commands will install the correct code from neuronunit@optimization

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• Merge branch 'neuronunit_reduced_cells' of https://github.com/russelljjarvis/BluePyOpt into neuronunit_reduced_cells

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• Updated config.yml

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• converted spaces to tabs

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• converted spaces to tabs

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• converted spaces to tabs

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• shorter build+tests

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• more ci fixing

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• perhaps ci will work with different test dependency

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• added in necessary test

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Commits on Feb 1, 2021

• changed setup.py to try to coax tox to run

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Commits on Feb 4, 2021

• abolished DataTC useful methods persist because of inheritance

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Commits on Feb 5, 2021

• change dependencies to run on tox

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• change dependencies to run on tox

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• process dependency links

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• install requires

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• install requires

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• install requires

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• install requires

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• ci dependency change

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• ci setup dependency change

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Commits on Feb 6, 2021

• merge

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Commits on Feb 13, 2021

• factored out dtc and replaced with models

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Commits on Feb 14, 2021

• update requirements

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• update CI

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• update

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• update ci

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• update CI

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• update

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• try to get tox CI working

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Commits on Feb 18, 2021

• update for pull request

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Commits on Feb 22, 2021

• Fix py2 testing error due to PR #998 in nrn.

  

  Jaquier Aurélien Tristan

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Commits on Feb 23, 2021

• Merge pull request BlueBrain#349 from AurelienJaquier/master

  Show description for 5c0be1a
  wvangeit

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• Add feature computation functions to CellEvaluator, ObjectivesCalculator and Objectives

  

  Tanguy Damart

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• Merge branch 'master' into feature_values

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• Updated documentation to add the README on RTD.

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• Add tests

  

  Tanguy Damart

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• Merge branch 'feature_values' of https://github.com/BlueBrain/BluePyOpt into feature_values

  

  Tanguy Damart

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Commits on Feb 24, 2021

• Merge pull request BlueBrain#350 from BlueBrain/feature_values

  Show description for 0b17fda
  wvangeit

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  0b17fda

• Fixed the bagde table.

  alex4200

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• Merge branch 'master' into alexdoc

  wvangeit

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• Merge pull request BlueBrain#351 from alex4200/alexdoc

  Show description for 4f25199
  wvangeit

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• Added config files for RTD

  alex4200

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• Merge branch 'alexdoc' of github.com:alex4200/BluePyOpt into alexdoc

  alex4200

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• Merge branch 'master' into alexdoc

  wvangeit

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  57206ce

• Merge pull request BlueBrain#352 from alex4200/alexdoc

  Show description for 5c8267d
  wvangeit

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  5c8267d

• Commenting out the license text.

  alex4200

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• Merge branch 'alexdoc' of github.com:alex4200/BluePyOpt into alexdoc

  alex4200

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• Fixing image in README: Provide proper path depending where the README is used

  alex4200

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• Merge pull request BlueBrain#353 from alex4200/alexdoc

  Show description for c9428ad
  wvangeit

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  c9428ad

• Fix path in readthedocs yaml

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• Fixing image location in README

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Commits on Mar 8, 2021

• update testing

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Commits on Mar 10, 2021

• update

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• update

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• update

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• merge

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• merged with origin master @bbp.bpo, checked nose test compatibility, edited setup.py

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• moved dependencies into extras_require

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• update for CI unittesting passing

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• local CI verification

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• update

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• might work

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Commits on Mar 24, 2021

• changed test file names

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• update file names

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• before merge master/origin

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• update tox

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• update for PR

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Commits on Mar 25, 2021

• add missing s into https of extra requirement

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• update

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• update

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• neuronunit opt is pip installable, make numba models pip installable

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• edited CI

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• update

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• update

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• ci test

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• update

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• update CI

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Commits on Mar 26, 2021

• update CI

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• CI update

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• CI update

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• CI update

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• CI update

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• update

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• turn off allensdk logging

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• update CI

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• update

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• update CI

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• update CI

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• update CI

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• update CI

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• update ci

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• blah

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• blah

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Commits on Mar 27, 2021

• update

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• tox might work now

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• update

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• update

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• update CI

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• update CI

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• try remote machine

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• update CI

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• update CI

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• update

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• update

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Commits on Mar 28, 2021

• update

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• update

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Commits on Mar 29, 2021

• Update main.yml

  russelljjarvis

  authored
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Commits on Apr 1, 2021

• wqMerge branch 'neuronunit_reduced_cells' of https://github.com/russelljjarvis/BluePyOpt into neuronunit_reduced_cells

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• modified some files with black so that they would pass tox style check

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• update for remote

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• update

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Commits on Apr 5, 2021

• update

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• update

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Commits on Apr 13, 2021

• fixed tab/space error in bpo

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