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Update README.md
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samblau authored Oct 23, 2023
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Expand Up @@ -39,28 +39,35 @@ HiPRGen is supported for MacOS and Linux and has been tested on MacOS 11.6 and 1
On the LRC cluster, an environment where HiPRGen can be run is set up as follows:

```
cd $HOME
module load python/3.8.2-gcc
pip install --user mpi4py pymatgen
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
module load python/3.9.12
conda init
logout, log back in
# load miniconda
source ./.bashrc
module load python/3.8.2-gcc
module load gcc/7.4.0
module load openmpi/4.0.1-gcc
pip3 install --user mpi4py
conda create -n HiPRGen_RNMC python=3.8
conda activate HiPRGen_RNMC
conda install -c conda-forge openbabel pygraphviz pymatgen pycairo
git clone https://github.com/BlauGroup/HiPRGen.git
git clone https://github.com/BlauGroup/RNMC.git
cd RNMC
module load gsl
CC=g++ ./build.sh
CXX=g++ ./build.sh
export PATH=$PATH:$PROJ/RNMC/build
can pick up from reloading the environment:
conda activate HiPRGen_RNMC
module load python/3.8.2-gcc
module load gcc/7.4.0
module load openmpi/4.0.1-gcc
module load gsl
export PATH=$PATH:$PROJ/RNMC/build
cd ../HiPRGen
python test.py 2
```

### Tests
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