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Add RSPM to install.sh to improve install speed
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millerh1
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Jun 26, 2022
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,5 @@ | ||
| #!/bin/bash | ||
| sudo apt install -y libfontconfig1-dev | ||
| R -e "options(repos = c(RSPM = 'https://packagemanager.rstudio.com/all/latest')); install.packages(c('shiny','DT','plotly','aws.s3','shinycssloaders','shinyvalidate','futile.logger','kernlab','randomForest','rpart','MASS','prompter','shinyWidgets','pbapply','callr','VennDiagram','uuid','tidyverse','kableExtra','pheatmap', 'ggprism', 'bslib', 'RColorBrewer', 'BiocManager'), repos = 'http://cran.rstudio.com/')" | ||
| R -e "install.packages(c('shiny','DT','plotly','aws.s3','shinycssloaders','shinyvalidate','futile.logger','kernlab','randomForest','rpart','MASS','prompter','shinyWidgets','pbapply','callr','VennDiagram','uuid','tidyverse','kableExtra','pheatmap', 'ggprism', 'bslib', 'RColorBrewer', 'BiocManager'), repos = 'https://packagemanager.rstudio.com/all/latest')" | ||
| R -e "options(repos = c(RSPM = 'https://packagemanager.rstudio.com/all/latest')); BiocManager::install(c('RLSeq'))" | ||
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