Final 2.2.2 patch clean up

Change versioning in the dictionary table titles and version name rows. Also updated the tables in the templates to reflect the current and patched reference tables.
Big-Life-Lab · Aug 1, 2024 · b2108dc · b2108dc
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diff --git a/dictionary-tables/ODM_countries.csv b/dictionary-tables/ODM_countries.csv
@@ -1,4 +1,4 @@
-Version,2.2.1,,,,,,,,,,,,,
+Version,2.2.2,,,,,,,,,,,,,
 isoCode,isoCodeX,numCode,tld,nameEngl,nameOfficial,sovereignty,countryExonym,capitalExonym,countryEndonym,capitalEndonym,langScript,phone,utc,utcDST
 AF,AFG,4,.af,Afghanistan,The Islamic Republic of Afghanistan,UN member state,Afghanistan,Kabul,"Afġānistān, افغانستان","Kabul, كابل","Pashto/Dari, (Arabic script)",93,+04:30,
 AX,ALA,248,.ax,Åland Islands,Åland,Finland,Åland,Mariehamn,"Åland, Ahvenanmaa","Mariehamn, Maarianhamina","Swedish, Finnish",+358 (18),+02:00,+03:00

diff --git a/dictionary-tables/ODM_countries_2.2.1.csv → dictionary-tables/ODM_countries_2.2.2.csv b/dictionary-tables/ODM_countries_2.2.1.csv → dictionary-tables/ODM_countries_2.2.2.csv
diff --git a/dictionary-tables/ODM_languages.csv b/dictionary-tables/ODM_languages.csv
@@ -1,4 +1,4 @@
-Version,2.2.1,,,,,,,,
+Version,2.2.2,,,,,,,,
 lang,langFam,langName,natName,iso6391,iso6392T,firstReleased,lastUpdated,changes,notes
 eng,Indo-European,English,English,en,eng,2.0.0,2.0.0,,
 fra,Indo-European,French,Français,fr,fre,2.0.0,2.0.0,,

diff --git a/dictionary-tables/ODM_languages_2.2.1.csv → dictionary-tables/ODM_languages_2.2.2.csv b/dictionary-tables/ODM_languages_2.2.1.csv → dictionary-tables/ODM_languages_2.2.2.csv
diff --git a/dictionary-tables/ODM_lists-HPAIV-H5N1.csv b/dictionary-tables/ODM_lists-HPAIV-H5N1.csv
diff --git a/...ry-tables/ODM_lists-HPAIV-H5N1_v2.2.1.csv → ...ry-tables/ODM_lists-HPAIV-H5N1_v2.2.2.csv b/...ry-tables/ODM_lists-HPAIV-H5N1_v2.2.1.csv → ...ry-tables/ODM_lists-HPAIV-H5N1_v2.2.2.csv
diff --git a/dictionary-tables/ODM_lists-planes.csv b/dictionary-tables/ODM_lists-planes.csv
@@ -1,4 +1,4 @@
-Version,2.2.1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+Version,2.2.2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
 Target,Mutation,,,,Target,Allele,,,,Target,Variant,,,,Genetic Unit Set,,,,saMaterial,"(sample material, 'sample type')",,,Sample Collection,,,,Fraction analyzed,,,,methodID,(PCR//Sequencing),,,,pcrSet,"(for partID = pcrmeth, label = PCR method)",,,scriptSet,"(for partID = scriptVersion, label = Script version)",,,seqStratSet,"(for partID = seqStrat, label = Sequencing strategy)",,,seqSelSet,"(for partID = seqSel, label = Sequencing selection)",,,seqLaySet,"(for partID = seqLay, label = Sequencing layout)",,,Aggregation,,,,target type,,,,sample shed,,,,Airport,,,methodID,(PCR//Sequencing),,,Target,,,
 partID,label,partDesc,unitSetID,,partID,label,partDesc,unitSetID,,partID,label,partDesc,unitSetID,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,catSet,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,partID,label,partDesc,,IATA code,Airport,Country,partID,label,partDesc,,partID,label,partDesc,unitSetID
 n1n2,Combined N1 and N2 sars-cov-2 gene target,Combined N1 and N2 sars-cov-2 gene target,geneticUnitSet,,cov2Me,SARS-CoV-2 measure,Measure the amount of SARS-CoV-2 virus.,geneticUnitSet,,mu,Mu,B.1.621,geneticUnitSet,,boc,Breadth of coverage (>=5x depth),Positions with read depth greater or equal to 5.,,afu,Air filter,Air filter as part of filtration or circulating unit. ,,areaPr,Area proportional sample,An area proportional sample.,,liq,Liquid fraction,Liquid fraction of a sample.,,primer,Genetic primer,Method ID used for indicating the primer used for a PCR or sequencing assay.,primerSet,,bioRadDdpcr,Digital droplet emulsification PCR,Describes a PCR analysis done using BioRad's digital droplet emulsification PCR technology.,,gromstole,Gromstole 1.0 Script,Gromstole 1.0 Script for sequencing.,,amp,Amplicon sequencing,Specifies the amplicon strategy for genetic sequencing,,ranSeq,Random sequencing selection method,Specifies the random selection method for sequencing,,sinLay,Single Layout,Specifies the single layout for a sequencing method,,floMean,Flow-normalized mean,Mean measure normalized to wastewater flow.,,allele,Alleles class,Measures and methods related to alleles.,,airpln,Airplane,Airplane sample shed category type,,AAR,Aarhus,Denmark,,*** PCR method ***,,,,*** Mutation ***,,

diff --git a/...ionary-tables/ODM_lists-planes_v2.2.1.csv → ...ionary-tables/ODM_lists-planes_v2.2.2.csv b/...ionary-tables/ODM_lists-planes_v2.2.1.csv → ...ionary-tables/ODM_lists-planes_v2.2.2.csv
diff --git a/dictionary-tables/ODM_parts_2.2.1.csv → dictionary-tables/ODM_parts_2.2.2.csv b/dictionary-tables/ODM_parts_2.2.1.csv → dictionary-tables/ODM_parts_2.2.2.csv
diff --git a/dictionary-tables/ODM_sets_2.2.1.csv → dictionary-tables/ODM_sets_2.2.2.csv b/dictionary-tables/ODM_sets_2.2.1.csv → dictionary-tables/ODM_sets_2.2.2.csv
diff --git a/dictionary-tables/ODM_translations_2.2.1.csv → dictionary-tables/ODM_translations_2.2.2.csv b/dictionary-tables/ODM_translations_2.2.1.csv → dictionary-tables/ODM_translations_2.2.2.csv
diff --git a/dictionary-tables/ODM_zones.csv b/dictionary-tables/ODM_zones.csv
@@ -1,4 +1,4 @@
-Version,2.2.1,
+Version,2.2.2,
 isoCode,isoZone,zoneName
 AD,AD-02,Canillo
 AD,AD-03,Encamp

diff --git a/dictionary-tables/ODM_zones_2.2.1.csv → dictionary-tables/ODM_zones_2.2.2.csv b/dictionary-tables/ODM_zones_2.2.1.csv → dictionary-tables/ODM_zones_2.2.2.csv
diff --git a/templates/Airports_Report_Template-0.4.1.xlsx b/templates/Airports_Report_Template-0.4.1.xlsx
diff --git a/templates/H5N1_Report_Template-0.1.1.xlsx b/templates/H5N1_Report_Template-0.1.1.xlsx
diff --git a/templates/ODM_templates_2.2.0.xlsx b/templates/ODM_templates_2.2.0.xlsx
diff --git a/templates/ODM_templates_2.2.2.xlsx b/templates/ODM_templates_2.2.2.xlsx