Update documentation in preparation for release 2.4.4

BenLangmead · May 23, 2021 · 10caed9 · 10caed9
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diff --git a/BOWTIE2_VERSION b/BOWTIE2_VERSION
@@ -1 +1 @@
-2.4.3
+2.4.4
diff --git a/NEWS b/NEWS
@@ -4,7 +4,7 @@ Bowtie 2 NEWS
 Bowtie 2 is available for download from the project website,
 http://bowtie-bio.sf.net/bowtie2 and on Github,
 https://github.com/BenLangmead/bowtie2/releases.  2.0.0-beta1 is
-the first version released to the public and 2.4.3 is the latest
+the first version released to the public and 2.4.4 is the latest
 version.  Bowtie 2 is licensed under the GPLv3 license.  See `LICENSE'
 file for details.
 
@@ -19,6 +19,11 @@ Please report any issues to the Bowtie 2 Github page or using the Sourceforge bu
 Version Release History
 =======================
 
+Version 2.4.4 - May 23, 2021
+
+    * Fixed an issue that would sometimes cause deadlocks in `bowtie2`
+      when running multithreaded
+
 Version 2.4.3 - May 13, 2021
 
     * Replaced TBB concurrency with C++ threads

diff --git a/README.md b/README.md
@@ -1,6 +1,7 @@
 
 <!-- badges: start -->
-[![Generic badge](https://img.shields.io/badge/version-2.4.3-green.svg)](https://shields.io/)
+![Github Actions](https://github.com/BenLangmead/bowtie2/actions/workflows/bowtie2.yml/badge.svg)
+[![Generic badge](https://img.shields.io/badge/version-2.4.4-green.svg)](https://shields.io/)
 [![Build Status](https://travis-ci.org/BenLangmead/bowtie2.svg?branch=master)](https://travis-ci.org/BenLangmead/bowtie2)
 [![License: GPL v3](https://img.shields.io/badge/license-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 <!--badges: end -->

diff --git a/doc/website/recent_news.ssi b/doc/website/recent_news.ssi
@@ -1,3 +1,8 @@
+<h2>Version 2.4.4 - May 23, 2021</h2>
+<ul>
+    <li>Fixed an issue that would sometimes cause deadlocks in <code>bowtie2</code> when running multithreaded</li>
+</ul>
+
 <h2>Version 2.4.3 - May 13, 2021</h2>
 <ul>
     <li>Replaced TBB concurrency with C++ threads</li>

diff --git a/doc/website/rhsidebar.ssi b/doc/website/rhsidebar.ssi
@@ -18,10 +18,10 @@
         </tr>
       <tr>
       <td>
-        <a href="https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.3">Bowtie2 v2.4.3</a>
+        <a href="https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.4">Bowtie2 v2.4.4</a>
       </td>
       <td align="right">
-        13/05/21&nbsp;
+        23/05/21&nbsp;
       </td>
       </tr>
       <tr>