Merge pull request #76 from Becksteinlab/remove-execute-bits

removed executable files from non-executable files
Becksteinlab · Dec 21, 2024 · 0fd0774 · 0fd0774
2 parents 17c7f32 + f3387b1
commit 0fd0774
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diff --git a/.codecov.yml b/.codecov.yml
diff --git a/.gitattributes b/.gitattributes
diff --git a/.gitignore b/.gitignore
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
diff --git a/.pylintrc b/.pylintrc
diff --git a/AUTHORS.md b/AUTHORS.md
diff --git a/CHANGELOG.md b/CHANGELOG.md
diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
diff --git a/MANIFEST.in b/MANIFEST.in
diff --git a/README.md b/README.md
diff --git a/benchmarks/environment.yml b/benchmarks/environment.yml
diff --git a/devtools/conda-envs/test_env.yaml b/devtools/conda-envs/test_env.yaml
diff --git a/docs/Makefile b/docs/Makefile
diff --git a/docs/README.md b/docs/README.md
diff --git a/docs/requirements.yaml b/docs/requirements.yaml
diff --git a/docs/source/_static/README.md b/docs/source/_static/README.md
diff --git a/docs/source/_templates/README.md b/docs/source/_templates/README.md
diff --git a/docs/source/api.rst b/docs/source/api.rst
diff --git a/docs/source/conf.py b/docs/source/conf.py
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diff --git a/docs/source/installation.rst b/docs/source/installation.rst
diff --git a/pyproject.toml b/pyproject.toml
diff --git a/readthedocs.yaml b/readthedocs.yaml
diff --git a/zarrtraj/__init__.py b/zarrtraj/__init__.py
diff --git a/zarrtraj/data/__init__.py b/zarrtraj/data/__init__.py
diff --git a/zarrtraj/data/create_COORDINATES_MISSING_H5MD_GROUP.py b/zarrtraj/data/create_COORDINATES_MISSING_H5MD_GROUP.py
diff --git a/zarrtraj/data/create_COORDINATES_MISSING_TIME_DSET.py b/zarrtraj/data/create_COORDINATES_MISSING_TIME_DSET.py
diff --git a/zarrtraj/data/create_COORDINATES_SYNTHETIC.py b/zarrtraj/data/create_COORDINATES_SYNTHETIC.py
diff --git a/zarrtraj/data/create_COORDINATES_VARIED_STEPS.py b/zarrtraj/data/create_COORDINATES_VARIED_STEPS.py
diff --git a/zarrtraj/data/create_ZARRTRAJ_xvf.py b/zarrtraj/data/create_ZARRTRAJ_xvf.py
diff --git a/zarrtraj/data/write_aligned_compressed_disk_h5md.py b/zarrtraj/data/write_aligned_compressed_disk_h5md.py
diff --git a/zarrtraj/data/write_aligned_compressed_disk_zarrmd.py b/zarrtraj/data/write_aligned_compressed_disk_zarrmd.py
diff --git a/zarrtraj/data/write_aligned_compressed_s3_zarrmd.py b/zarrtraj/data/write_aligned_compressed_s3_zarrmd.py
diff --git a/zarrtraj/data/write_aligned_uncompressed_disk_h5md.py b/zarrtraj/data/write_aligned_uncompressed_disk_h5md.py
diff --git a/zarrtraj/data/write_aligned_uncompressed_disk_zarrmd.py b/zarrtraj/data/write_aligned_uncompressed_disk_zarrmd.py
diff --git a/zarrtraj/data/write_aligned_uncompressed_s3_zarrmd.py b/zarrtraj/data/write_aligned_uncompressed_s3_zarrmd.py
diff --git a/zarrtraj/data/write_aligned_yiip_xtc.py b/zarrtraj/data/write_aligned_yiip_xtc.py
diff --git a/zarrtraj/tests/__init__.py b/zarrtraj/tests/__init__.py
diff --git a/zarrtraj/tests/conftest.py b/zarrtraj/tests/conftest.py
diff --git a/zarrtraj/tests/datafiles.py b/zarrtraj/tests/datafiles.py