release 0.9.0 (release candidate 1)
Pre-release
Pre-release
orbeckst
released this
10 Oct 18:52
·
17 commits
to develop
since this release
Pre-release for the new 0.9.0
- new features (dihedral ensemble analysis workflow)
- dropping support for old Python versions (sorry, too difficult to maintain and keep up with the Python eco system)
What's Changed
- changed dihedral atom group selection strings in test_dihedral.py by @cadeduckworth in #218
- CI updates by @orbeckst in #220
- Update em_charmm.mdp by @VOD555 in #210
- use new micro mamba action by @orbeckst in #221
- developing back end run methods by @cadeduckworth in #216
- Support toluene solvent by @VOD555 in #224
- Support cgenff toluene by @VOD555 in #228
- Fix setup and support toluene in
mdpow-solvationenergy
by @VOD555 in #230 - Use AutoMBAR instead of MBAR by @VOD555 in #234
- Automated Dihedral Analysis by @cadeduckworth in #217
- Periodic Angle Padding by @cadeduckworth in #242
- Workflows Base Module by @cadeduckworth in #229
- update banner logging by @orbeckst in #247
- Update statistical inefficiency calculation with statistical_inefficiency in alchemlyb 2.1.0 by @VOD555 in #250
- drop python 3.7 and testing improvements by @orbeckst in #249
- test on GROMACS 2022 and 2023 by @orbeckst in #255
- use relative imports inside MDPOW by @orbeckst in #257
- update to mamba-org/setup-micromamba by @orbeckst in #258
- Dihedral Plots: RDKit Mol Object by @cadeduckworth in #243
- Review all kwargs and consistency in top-level function calls by @cadeduckworth in #263
- initialize guess_atoms function PR by @cadeduckworth in #264
- Black formatting by @a-ws-m in #269
- remove logger for SI in mdpow.fep by @VOD555 in #276
- Use OOP forcefields by @a-ws-m in #267
- replace scipy.integrate.simps with simpson by @orbeckst in #282
- update versioneer by @orbeckst in #287
- Update .readthedocs.yaml by @orbeckst in #284
New Contributors
Full Changelog: release-0.8.0...release-0.9.0rc1