Merge pull request #173 from Becksteinlab/prep-release-070

finalize CHANGES
Becksteinlab · Aug 1, 2021 · 43485dd · 43485dd
2 parents 4d2498b + 77bf4ad
commit 43485dd
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diff --git a/CHANGES b/CHANGES
@@ -5,7 +5,7 @@ CHANGES for MDPOW
 Add summary of changes for each release. Use ISO dates. Reference
 GitHub issues numbers and PR numbers.
 
-2021-07-xx    0.7.0
+2021-08-02    0.7.0
 orbeckst, VOD555, ALescoulie
 
 Changes

diff --git a/doc/logo/LICENSE b/doc/logo/LICENSE
@@ -0,0 +1,7 @@
+POW! image Image by <a href="https://pixabay.com/users/aitoff-388338/?utm_source=link-attribution&amp;utm_medium=referral&amp;utm_campaign=image&amp;utm_content=1601674">Andrew Martin</a> from <a href="https://pixabay.com/?utm_source=link-attribution&amp;utm_medium=referral&amp;utm_campaign=image&amp;utm_content=1601674">Pixabay</a>
+Andrew Martin from Pixabay.
+
+Used under Pixabay license https://pixabay.com/service/license/
+(Free for commercial use
+No attribution required )
+
diff --git a/doc/logo/mdpow-ico-32x32.pdf b/doc/logo/mdpow-ico-32x32.pdf
diff --git a/doc/logo/mdpow-ico-32x32.tif b/doc/logo/mdpow-ico-32x32.tif
diff --git a/doc/logo/mdpow-logo.pdf b/doc/logo/mdpow-logo.pdf
diff --git a/doc/logo/mdpow.ico b/doc/logo/mdpow.ico
diff --git a/doc/logo/pow-1601674_640.png b/doc/logo/pow-1601674_640.png
diff --git a/doc/sphinx/source/_static/mdpow-logo.png b/doc/sphinx/source/_static/mdpow-logo.png
diff --git a/doc/sphinx/source/_static/mdpow.ico b/doc/sphinx/source/_static/mdpow.ico
diff --git a/doc/sphinx/source/conf.py b/doc/sphinx/source/conf.py
@@ -107,8 +107,7 @@
 html_theme = 'sphinx_rtd_theme'
 
 html_theme_options = {
-    'canonical_url': '',
-    #'logo_only': True,
+    'logo_only': False,
     'display_version': True,
     'prev_next_buttons_location': 'bottom',
     'style_external_links': False,
@@ -137,12 +136,12 @@
 
 # The name of an image file (relative to this directory) to place at the top
 # of the sidebar.
-#html_logo = None
+html_logo = "_static/mdpow-logo.png"
 
 # The name of an image file (within the static path) to use as favicon of the
 # docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
 # pixels large.
-#html_favicon = None
+html_favicon = "_static/mdpow.ico"
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
@@ -229,7 +228,7 @@
 intersphinx_mapping = {'https://docs.python.org/': None,
                        'https://numpy.org/doc/stable/': None,
                        'https://docs.scipy.org/doc/scipy/reference/': None,
-                       'https://gromacswrapper.readthedocs.org/en/latest/': None,
+                       'https://gromacswrapper.readthedocs.io/en/latest': None,
                    }
 
 

diff --git a/doc/sphinx/source/forcefields.txt b/doc/sphinx/source/forcefields.txt
@@ -0,0 +1 @@
+.. automodule:: mdpow.forcefields
diff --git a/doc/sphinx/source/index.txt b/doc/sphinx/source/index.txt
@@ -50,7 +50,7 @@ It should be possible to use any of these Gromacs versions without
 further adjustments, thanks to the underlying GromacsWrapper library
 [#GromacsWrapperFramework]_.
 
-Nevertheless, you should _always_ check the topology and runinput
+Nevertheless, you should *always* check the topology and runinput
 (mdp) files for the version of Gromacs_ that you are using.
 
 
@@ -141,7 +141,6 @@ For current issues and open feature requests please look through the
    fep
    utilities
    forcefields
-   tables
 
 
 .. rubric:: Indices and tables