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Add morphological_operations tool #106

Merged
merged 4 commits into from
Mar 8, 2024
Merged

Add morphological_operations tool #106

merged 4 commits into from
Mar 8, 2024

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kostrykin
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@kostrykin kostrykin commented Mar 7, 2024 •
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For the contributor:

  • - I have read the CONTRIBUTING.md document.
  • - License permits unrestricted use (educational + commercial).
  • - This PR adds or updates a tool or tool collection.
  • - This PR does something else (explain below).

Add tool for performing intensity-based + binary morphological operations both single-channel + multi-channel 2-D images.

xref #105

@kostrykin
Add morphological_operations tool
0f6b2a6 
Squashed commit of the following:

commit 0edf531
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 23:48:36 2024 +0100

    Update test data

commit cf17824
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:44:12 2024 +0000

    Fix UI

commit 9992a54
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:29:58 2024 +0000

    Fix bug

commit 5bb0d2c
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 23:26:35 2024 +0100

    Update test output data

commit d720124
Merge: 1408aab c57e084
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:22:47 2024 +0000

    Merge branch 'add-morphology-tools' of https://github.com/kostrykin/galaxy-image-analysis into add-morphology-tools

commit 1408aab
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:22:14 2024 +0000

    Fix output type

commit c57e084
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 23:16:53 2024 +0100

    Add test results

commit addf5c1
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:16:35 2024 +0000

    Add more tests

commit edf0dd5
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 22:07:40 2024 +0000

    Fix bug

commit 9094e30
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:44:13 2024 +0000

    Fix tool

commit 77bd875
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:40:00 2024 +0000

    Fix tool

commit 0884095
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:37:59 2024 +0000

    Fix profile

commit 3220ddb
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:37:05 2024 +0000

    Add help

commit 657018c
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:32:07 2024 +0000

    Add citation

commit 5df1d74
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:29:01 2024 +0000

    Add tests for `morphological_operations` tool

commit 59aa195
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:15:58 2024 +0000

    Fix `morphological_operations` tool

commit e048176
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 21:07:08 2024 +0000

    Finish implementation of `morphological_operations` tool

commit 106075c
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 18:56:08 2024 +0000

    Continue implementation of `morphological_operations` tool

commit 8057408
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 13:31:47 2024 +0000

    Continue implementation of `morphological_operations` tool

commit 442a459
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 13:04:26 2024 +0000

    Add `morphological_operations` tool

commit 0ab2a2d
Author: Leonid Kostrykin <[email protected]>
Date:   Thu Mar 7 12:58:35 2024 +0000

    Add devcontainer.json with useful extensions
bgruening
bgruening reviewed Mar 8, 2024
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.devcontainer/devcontainer.json Outdated
@@ -0,0 +1,11 @@
{
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This one should be removed and added to the gitignore file I think.

bgruening
bgruening approved these changes Mar 8, 2024
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Please remove this one file, then its perfect!

@bgruening bgruening merged commit c6d2a4f into BMCV:master Mar 8, 2024
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@kostrykin
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Thanks a lot @bgruening!

@kostrykin kostrykin deleted the add-morphology-tools/upstream branch March 8, 2024 17:30
This was referenced Mar 8, 2024
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kostrykin added a commit that referenced this pull request Mar 10, 2024
@kostrykin
Update README.md
ad9f284 
Add new tools from #106, #107, #108
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@bgruening bgruening bgruening approved these changes

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@kostrykin @bgruening