Add image verification support to CI (#117)

* Update pr.yaml

* Update

* Update pr.yaml

* Add `pip install pillow`

* Temporarilly fix CI

* Update pr.yaml

* Update ci.yaml

* Add test tool from `/test/functional/tools/image_diff.xml`

* Update pr.yaml

* Add .shed.yml

* Add missing test files

* Switch CI to galaxy fork `kostrykin/galaxy` branch `galaxy-image-analysis`

This is a temporary change to enable the features from:

 - galaxyproject/galaxy#17556
 - galaxyproject/galaxy#17581

* Remove `test` tool

.github/workflows/ci.yaml

@@ -6,8 +6,8 @@ on:
   repository_dispatch:
     types: [run-all-tool-tests-command]
 env:
-  GALAXY_FORK: galaxyproject
-  GALAXY_BRANCH: release_23.2
+  GALAXY_FORK: kostrykin  # Temporary change to enable the features from https://github.com/galaxyproject/galaxy/pull/17556 and https://github.com/galaxyproject/galaxy/pull/17581
+  GALAXY_BRANCH: galaxy-image-analysis  # Temporary change to enable the features from https://github.com/galaxyproject/galaxy/pull/17556 and https://github.com/galaxyproject/galaxy/pull/17581
   MAX_CHUNKS: 40
 jobs:
   setup:
@@ -96,6 +96,25 @@ jobs:
       with:
         path: ~/.cache/pip
         key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
+#
+# ---------------------------------------------------------
+# This is a temporary addition to enable the features from
+# - https://github.com/galaxyproject/galaxy/pull/17556
+# - https://github.com/galaxyproject/galaxy/pull/17581
+#
+    - name: Planemo setup 
+      uses: galaxyproject/planemo-ci-action@v1
+      with:
+        mode: setup
+        repository-list: ${{ needs.setup.outputs.repository-list }}
+        tool-list: ${{ needs.setup.outputs.tool-list }}
+        additional-planemo-options: --biocontainers -s tests,output,inputs,help,general,command,citations,tool_xsd,xml_order,tool_urls,shed_metadata
+    - run: |
+        python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/util
+        python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/tool_util
+#
+# ---------------------------------------------------------
+#
     - name: Planemo lint
       uses: galaxyproject/planemo-ci-action@v1
       id: lint
@@ -150,6 +169,28 @@ jobs:
       id: cpu-cores
     - name: Clean dotnet folder for space
       run: rm -Rf /usr/share/dotnet
+#
+# ---------------------------------------------------------
+# This is a temporary addition to enable the features from
+# - https://github.com/galaxyproject/galaxy/pull/17556
+# - https://github.com/galaxyproject/galaxy/pull/17581
+#
+    - name: Planemo setup 
+      uses: galaxyproject/planemo-ci-action@v1
+      with:
+        mode: setup
+        repository-list: ${{ needs.setup.outputs.repository-list }}
+        galaxy-fork: ${{ needs.setup.outputs.fork }}
+        galaxy-branch: ${{ needs.setup.outputs.branch }}
+        chunk: ${{ matrix.chunk }}
+        chunk-count: ${{ needs.setup.outputs.chunk-count }}
+    - run: |
+        python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/util
+        python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/tool_util
+        python -m pip install pillow
+#
+# ---------------------------------------------------------
+#
     - name: Planemo test
       uses: galaxyproject/planemo-ci-action@v1
       id: test

.github/workflows/pr.yaml

@@ -16,8 +16,8 @@ on:
       - 'docs/**'
       - '*'
 env:
-  GALAXY_FORK: galaxyproject
-  GALAXY_BRANCH: release_23.2
+  GALAXY_FORK: kostrykin  # Temporary change to enable the features from https://github.com/galaxyproject/galaxy/pull/17556 and https://github.com/galaxyproject/galaxy/pull/17581
+  GALAXY_BRANCH: galaxy-image-analysis  # Temporary change to enable the features from https://github.com/galaxyproject/galaxy/pull/17556 and https://github.com/galaxyproject/galaxy/pull/17581
   MAX_CHUNKS: 4
   MAX_FILE_SIZE: 1M
 concurrency:
@@ -133,6 +133,18 @@ jobs:
       if: ${{ github.event_name != 'pull_request' }}
       run: |
         echo "FAIL_LEVEL=error" >> "$GITHUB_ENV"
+#
+# ---------------------------------------------------------
+# This is a temporary addition to enable the features from
+# - https://github.com/galaxyproject/galaxy/pull/17556
+# - https://github.com/galaxyproject/galaxy/pull/17581
+#
+    - run: |
+        python -m pip install --no-dependencies git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/util
+        python -m pip install --no-dependencies git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/tool_util
+#
+# ---------------------------------------------------------
+#
     - name: Planemo lint
       uses: galaxyproject/planemo-ci-action@v1
       id: lint
@@ -292,6 +304,19 @@ jobs:
       id: cpu-cores
     - name: Clean dotnet folder for space
       run: rm -Rf /usr/share/dotnet
+#
+# ---------------------------------------------------------
+# This is a temporary addition to enable the features from
+# - https://github.com/galaxyproject/galaxy/pull/17556
+# - https://github.com/galaxyproject/galaxy/pull/17581
+#
+    - run: |
+        python -m pip install --no-dependencies git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/util
+        python -m pip install --no-dependencies git+https://[email protected]/galaxyproject/galaxy.git@5c1d045ce7b1e45f85608346baed5455324ee967#subdirectory=packages/tool_util
+        python -m pip install pillow
+#
+# ---------------------------------------------------------
+#
     - name: Planemo test
       uses: galaxyproject/planemo-ci-action@v1
       id: test