TRONCO release v2.18.0

TRONCO stable Bioconductor release v2.18.0.

TRONCO release v2.16.2

TRONCO stable Bioconductor release v2.16.2.

TRONCO release v2.16.1

TRONCO stable Bioconductor release v2.16.1.

TRONCO release v2.14.2

TRONCO stable Bioconductor release v2.14.2.

TRONCO release v2.12.0

TRONCO stable Bioconductor release v2.12.0.

TRONCO release v2.10.0

TRONCO stable Bioconductor release v2.10.0.

TRONCO release v2.8.0

TRONCO stable release v2.8.0.

Coconut Crub

TRONCO stable release v2.6.1.

Mantis Shrimp

TRONCO package release 2.0

This version includes CAPRESE and CAPRI algorithms in a parallel implementation, it supports common input formats such as GISTIC (for Copy Number Variants), MAF (for mutations' annotation), supports TCGA samples editing and queries to the the cBioPortal. This version comes with new plotting capabilities, and a general from-scratch design. It is not compatible with previous releases.

The project is hosted at https://sites.google.com/site/troncopackage/

Mantis Shrimp beta13

Improved documentation and vignette.
Various minor bugs fixed.