Mantis Shrimp
TRONCO package release 2.0
This version includes CAPRESE and CAPRI algorithms in a parallel implementation, it supports common input formats such as GISTIC (for Copy Number Variants), MAF (for mutations' annotation), supports TCGA samples editing and queries to the the cBioPortal. This version comes with new plotting capabilities, and a general from-scratch design. It is not compatible with previous releases.
The project is hosted at https://sites.google.com/site/troncopackage/