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This is the code of the semester project for the course "Machine learning for 3D Geometry" of the Technical University of Munich.

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nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation

This is the code of the semester project for the course "Machine learning for 3D Geometry" of the Technical University of Munich.

The main branch contains the base nnU-Net framework. We made 5 modifications and saved each of them in their respective branch.

Branch Description
Main Base nnU-Net framework without any modification.
attention_nnunet Transformed the Vanilla U-Net into an Attention U-Net while mantaining the dynamic network creation.
stacked_dilated_convolutions Added in each level of the Vanilla U-Net stacked dilated convolutions while mantaining the dynamic network creation.
decreasingly_dilated_convolutions Added in each encoder level of the Vanilla U-Net decreasingly dilated convolutions while mantaining the dynamic network creation.
nnunet_3plus Transformed the Vanilla U-Net into an U-Net 3+ while mantaining the dynamic network creation.
model_quantization Techniques to reduce model footprint.

Please refer to the original nnU-Net repository for the installation guide.

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This is the code of the semester project for the course "Machine learning for 3D Geometry" of the Technical University of Munich.

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  • Python 99.4%
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