Merge pull request #174 from AustralianCancerDataNetwork/docs-fix #114

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	# Pipeline that checks branches that have been pushed to "Main" OR are the source branch in a newly created pull request into "Main"
	# Fails the test if there are Python syntax errors or undefined names OR pytest fails

	name: Pydicer Pytest and Pylint Validaiton

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8", "3.9"]
	poetry-version: [1.7.1]
	# os: [ubuntu-20.04, macos-latest, windows-latest]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install Poetry
	uses: abatilo/[email protected]
	with:
	poetry-version: ${{ matrix.poetry-version }}
	- name: Install Python modules with poetry
	run: \|
	poetry run pip install --upgrade pip
	poetry install
	poetry run pip install TotalSegmentator
	- name: Lint with Pylint
	run: \|
	poetry run pylint pydicer
	- name: Pytest validation
	run: \|
	poetry run pytest

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