Deploying to gh-pages from @ 01c0f26 🚀

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ac87e5d420034619955a775ffb623869
+config: 2ed6e01b4ff0f653049907622d3b0629
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/dolomite_base/alt_read_object.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.alt_read_object - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.alt_read_object</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span><span class="p">,</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Dict</span>
 <span class="kn">from</span> <span class="nn">.read_object</span> <span class="kn">import</span> <span class="n">read_object</span>
@@ -296,8 +298,8 @@ <h1>Source code for dolomite_base.alt_read_object</h1><div class="highlight"><pr
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/alt_save_object.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.alt_save_object - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.alt_save_object</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Optional</span>
 
@@ -296,8 +298,8 @@ <h1>Source code for dolomite_base.alt_save_object</h1><div class="highlight"><pr
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/choose_missing_placeholder.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.choose_missing_placeholder - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.choose_missing_placeholder</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">Sequence</span><span class="p">,</span> <span class="n">Optional</span>
 <span class="kn">import</span> <span class="nn">numpy</span>
@@ -372,8 +374,8 @@ <h1>Source code for dolomite_base.choose_missing_placeholder</h1><div class="hig
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/load_vector_from_hdf5.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.load_vector_from_hdf5 - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.load_vector_from_hdf5</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Sequence</span><span class="p">,</span> <span class="n">Union</span>
 <span class="kn">import</span> <span class="nn">numpy</span>
@@ -321,8 +323,8 @@ <h1>Source code for dolomite_base.load_vector_from_hdf5</h1><div class="highligh
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/read_atomic_vector.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.read_atomic_vector - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.read_atomic_vector</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Union</span>
 <span class="kn">from</span> <span class="nn">biocutils</span> <span class="kn">import</span> <span class="n">StringList</span><span class="p">,</span> <span class="n">IntegerList</span><span class="p">,</span> <span class="n">FloatList</span><span class="p">,</span> <span class="n">BooleanList</span><span class="p">,</span> <span class="n">NamedList</span>
@@ -290,8 +292,8 @@ <h1>Source code for dolomite_base.read_atomic_vector</h1><div class="highlight">
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/read_data_frame.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.read_data_frame - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,7 +197,7 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.read_data_frame</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">biocframe</span> <span class="kn">import</span> <span class="n">BiocFrame</span>
 <span class="kn">import</span> <span class="nn">h5py</span>
@@ -304,8 +306,8 @@ <h1>Source code for dolomite_base.read_data_frame</h1><div class="highlight"><pr
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>

_modules/dolomite_base/read_object.html

@@ -4,10 +4,10 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
+    <!-- Generated with Sphinx 7.3.7 and Furo 2024.04.27 -->
         <title>dolomite_base.read_object - dolomite-base unknown documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=437aa6ec" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
 
 
@@ -111,6 +111,8 @@
   <div class="visually-hidden">Hide table of contents sidebar</div>
 </label>
 
+<a class="skip-to-content muted-link" href="#furo-main-content">Skip to content</a>
+
 
 
 <div class="page">
@@ -195,12 +197,11 @@
             <i class="icon"><svg><use href="#svg-toc"></use></svg></i>
           </label>
         </div>
-        <article role="main">
+        <article role="main" id="furo-main-content">
           <h1>Source code for dolomite_base.read_object</h1><div class="highlight"><pre>
 <span></span><span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Any</span><span class="p">,</span> <span class="n">Optional</span>
 <span class="kn">from</span> <span class="nn">importlib</span> <span class="kn">import</span> <span class="n">import_module</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">json</span>
+<span class="kn">from</span> <span class="nn">.read_object_file</span> <span class="kn">import</span> <span class="n">read_object_file</span>
 
 
 <span class="n">read_object_registry</span> <span class="o">=</span> <span class="p">{</span>
@@ -254,8 +255,7 @@ <h1>Source code for dolomite_base.read_object</h1><div class="highlight"><pre>
 <span class="sd">        Some kind of object.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">if</span> <span class="n">metadata</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;OBJECT&quot;</span><span class="p">),</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">handle</span><span class="p">:</span>
-            <span class="n">metadata</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">handle</span><span class="p">)</span>
+        <span class="n">metadata</span> <span class="o">=</span> <span class="n">read_object_file</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
 
     <span class="n">tt</span> <span class="o">=</span> <span class="n">metadata</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span>
     <span class="k">if</span> <span class="n">tt</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">read_object_registry</span><span class="p">:</span>
@@ -309,8 +309,8 @@ <h1>Source code for dolomite_base.read_object</h1><div class="highlight"><pre>
     </aside>
   </div>
 </div><script src="../../_static/documentation_options.js?v=3f1b9271"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
+    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
     </body>
 </html>