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@AppliedBioinformatics

AppliedBioinformatics

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  1. runBNG runBNG Public

    An easy way to run BioNano genomic analysis

    Shell 27 7

  2. Brassica_oleracea_rapa_napus_code Brassica_oleracea_rapa_napus_code Public

    Code for the Brassica oleracea/rapa/napus genomic comparison

    Jupyter Notebook 16 5

  3. BioNanoAnalyst BioNanoAnalyst Public

    BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.

    Python 11 9

  4. Basics-of-Bash Basics-of-Bash Public

    Forked from robynand/Basics-of-Bash

  5. lncRNA_Prediction_Interpretation lncRNA_Prediction_Interpretation Public

    Forked from mitchgill16/lncRNA_Prediction_Interpretation

    Notebooks, Data and Scripts for lncRNA Prediction & Interpretation

    Jupyter Notebook

  6. maize_early_yield_prediction maize_early_yield_prediction Public

    Forked from mdanilevicz/maize_early_yield_prediction

    Repository with the code for predicting the yield of crop varieties using deep learning and early phenotype data.

Repositories

Showing 10 of 17 repositories
  • legume_gene_count Public
    AppliedBioinformatics/legume_gene_count’s past year of commit activity
    R 0 0 0 0 Updated Jun 17, 2022
  • Truegene Public Forked from shriprabhau/Truegene
    AppliedBioinformatics/Truegene’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated May 2, 2022
  • lncRNA_Prediction_Interpretation Public Forked from mitchgill16/lncRNA_Prediction_Interpretation

    Notebooks, Data and Scripts for lncRNA Prediction & Interpretation

    AppliedBioinformatics/lncRNA_Prediction_Interpretation’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Feb 19, 2022
  • gene-daisychain Public

    A web server linking genome annotations. Aimed at researchers working on single genes that want to know what the homolog in other published assemblies is.

    AppliedBioinformatics/gene-daisychain’s past year of commit activity
    JavaScript 3 LGPL-3.0 2 0 0 Updated Dec 17, 2021
  • maize_early_yield_prediction Public Forked from mdanilevicz/maize_early_yield_prediction

    Repository with the code for predicting the yield of crop varieties using deep learning and early phenotype data.

    AppliedBioinformatics/maize_early_yield_prediction’s past year of commit activity
    0 MIT 3 0 0 Updated Jul 22, 2021
  • Brassica_oleracea_rapa_napus_code Public

    Code for the Brassica oleracea/rapa/napus genomic comparison

    AppliedBioinformatics/Brassica_oleracea_rapa_napus_code’s past year of commit activity
    Jupyter Notebook 16 MIT 5 0 0 Updated Apr 29, 2021
  • runBNG Public

    An easy way to run BioNano genomic analysis

    AppliedBioinformatics/runBNG’s past year of commit activity
    Shell 27 MIT 7 12 0 Updated Apr 9, 2021
  • PAV_table_scripts Public

    Python scripts for constructing PAV tables for the Bioinformatics Methods chapter: Creating a Gene Presence/Absence Table using Mosdepth.

    AppliedBioinformatics/PAV_table_scripts’s past year of commit activity
    Python 1 0 1 0 Updated Feb 23, 2021
  • Basics-of-Bash Public Forked from robynand/Basics-of-Bash
    AppliedBioinformatics/Basics-of-Bash’s past year of commit activity
    0 1 0 0 Updated Jan 28, 2021
  • pangenome Public

    Python scripts designed to perform tasks associated with the pangenome construction method of iterative mapping and assembly

    AppliedBioinformatics/pangenome’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Dec 7, 2020
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